Aidong Zhang - researchr alias

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2011

A Computational Model of Mitigating Disease Spread in Spatial NetworksTaehyong Kim, Kang Li, Aidong Zhang, Surajit Sen, Murali Ramanathan. ijalr, 2(2):77-94, 2011. [doi]

2010

On Mining Statistically Significant Attribute Association InformationPritam Chanda, Jianmei Yang, Aidong Zhang, Murali Ramanathan. sdm 2010: 141-152 [doi]

Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteinsYoung-Rae Cho, Aidong Zhang. bmcbi, 11(S-3):3, 2010. [doi]

Predicting protein function by frequent functional association pattern mining in protein interaction networksYoung-Rae Cho, Aidong Zhang. titb, 14(1):30-36, 2010. [doi]

Mining Protein Interactome Networks to Measure Interaction Reliability and Select Hub ProteinsYoung-Rae Cho, Aidong Zhang. ijkdb, 1(3):20-35, 2010. [doi]

Computational Framework for Microstructural Bone Dynamics Model and Its EvaluationTaehyong Kim, Woochang Hwang, Aidong Zhang, Murali Ramanathan. bibe 2010: 92-98 [doi]

Identification of critical location on a microstructural bone networkTaehyong Kim, Jaehan Koh, Kang Li, Murali Ramanathan, Aidong Zhang. bibm 2010: 557-562 [doi]

A graph-based approach for computational model of bone microstructureTaehyong Kim, Murali Ramanathan, Aidong Zhang. bcb 2010: 563-568 [doi]

Semi-supervised learning protein complexes from protein interaction networksLei Shi, Aidong Zhang. bibm 2010: 247-252 [doi]

Functional Flow Simulation Based Analysis of Protein Interaction NetworkLei Shi, Young-Rae Cho, Aidong Zhang. bibe 2010: 144-149 [doi]

Proceedings of the First ACM International Conference on Bioinformatics and Computational Biology, BCB 2010, Niagara Falls, NY, USA, August 2-4, 2010Aidong Zhang, Mark Borodovsky, Gultekin Özsoyoglu, Armin R. Mikler, editors, ACM, 2010.

An improved projection pursuit clustering model and its application based on Quantum-behaved PSOQun Zhang, Xiujuan Lei, Xu Huang, Aidong Zhang. icnc 2010: 2581-2585 [doi]

2009

2008

A novel information theoretic method for detecting gene-gene and gene-environment interactions in complex diseasesP. Chanda, Aidong Zhang, M. Ramanthan. bibe 2008: 1-6 [doi]

A probabilistic framework to predict protein function from interaction data integrated with semantic knowledgeYoung-Rae Cho, Lei Shi, Murali Ramanathan, Aidong Zhang. bmcbi, 9, 2008. [doi]

Discovering Frequent Patterns of Functional Associations in Protein Interaction Networks for Function PredictionYoung-Rae Cho, Aidong Zhang. bibm 2008: 59-65 [doi]

Functional module detection by functional flow pattern mining in protein interaction networksYoung-Rae Cho, Lei Shi, Aidong Zhang. bmcbi, 9(S-10), 2008. [doi]

CASCADE: a novel quasi all paths-based network analysis algorithm for clustering biological interactionsWoochang Hwang, Young-Rae Cho, Aidong Zhang, Murali Ramanathan. bmcbi, 9, 2008. [doi]

Bridging centrality: graph mining from element level to group levelWoochang Hwang, Taehyong Kim, Murali Ramanathan, Aidong Zhang. kdd 2008: 336-344 [doi]

Multi-agent Model Analysis of the Containment Strategy for Avian Influenza (AI) in South KoreaTaehyong Kim, Woochang Hwang, Aidong Zhang, Surajit Sen, Murali Ramanathan. bibm 2008: 335-338 [doi]

SS-ClusterTree: a subspace clustering based indexing algorithm over high-dimensional image featuresHongli Xu, Dantong Yu, De Xu, Aidong Zhang. civr 2008: 95-104 [doi]

Future directions in multimedia retrieval: : impact of new technologyAidong Zhang, Shih-Fu Chang, Arif Ghafoor, Thomas S. Huang, Ramesh Jain, Rainer Lienhart. civr 2008: 663-664 [doi]

2007

Semantic integration to identify overlapping functional modules in protein interaction networksYoung-Rae Cho, Woochang Hwang, Murali Ramanathan, Aidong Zhang. bmcbi, 8, 2007. [doi]

Modularization of Protein Interaction Networks by Incorporating Gene Ontology AnnotationsYoung-Rae Cho, Woochang Hwang, Aidong Zhang. cibcb 2007: 233-238 [doi]

Feature Extraction from Microarray Expression Data by Integration of Semantic KnowledgeYoung-Rae Cho, Xian Xu, Woochang Hwang, Aidong Zhang. icmla 2008: 606-611 [doi]

Assessing Reliability of Protein-Protein Interactions by Semantic Data IntegrationYoung-Rae Cho, Woochang Hwang, Aidong Zhang. icdm 2007: 83-88 [doi]

Optimizing Flow-based Modularization by Iterative Centroid Search in Protein Interaction NetworksYoung-Rae Cho, Woochang Hwang, Aidong Zhang. bibe 2007: 342-349 [doi]

SIGN: reliable protein interaction identification by integrating the Similarity In GO and the similarity in protein interaction NetworksWoochang Hwang, Taehyong Kim, Young-Rae Cho, Aidong Zhang, Murali Ramanathan. bibe 2007: 1384-1388 [doi]

Mining gene-sample-time microarray data: a coherent gene cluster discovery approachDaxin Jiang, Jian Pei, Murali Ramanathan, Chuan Lin, Chun Tang, Aidong Zhang. kais, 13(3):305-335, 2007. [doi]

2006

VizStruct for visualization of genome-wide SNP analysesKavitha Bhasi, Li Zhang, Daniel Brazeau, Aidong Zhang, Murali Ramanathan. bioinformatics, 22(13):1569-1576, 2006. [doi]

Identification of Overlapping Functional Modules in Protein Interaction Networks: Information Flow-based ApproachYoung-Rae Cho, Woochang Hwang, Aidong Zhang. icdm 2006: 147-152 [doi]

Efficient Modularization of Weighted Protein Interaction Networks using k-Hop Graph ReductionYoung-Rae Cho, Woochang Hwang, Aidong Zhang. bibe 2006: 289-298

A novel functional module detection algorithm for protein-protein interaction networksWoochang Hwang, Young-Rae Cho, Aidong Zhang, Murali Ramanathan. almob, 1, 2006. [doi]

Digitalization of coastal management and decision making supported by multi-dimensional geospatial information and analysisRon Li, Keith W. Bedford, C. K. Shum, Xutong Niu, Feng Zhou, Vasilia Velissariou, J. Raul Ramirez, Aidong Zhang. DG.O 2006: 429-430 [doi]

Prediction of Protein Function Using Common-Neighbors in Protein-Protein Interaction NetworksChuan Lin, Daxin Jiang, Aidong Zhang. bibe 2006: 251-260

Towards Detecting Protein Complexes from Protein Interaction DataPengjun Pei, Aidong Zhang. iccS 2006: 734-741 [doi]

Extracting semantic concepts from images: a decisive feature pattern mining approachWei Wang, Aidong Zhang. mms, 11(4):352-366, 2006. [doi]

Boost Feature Subset Selection: A New Gene Selection Algorithm for Microarray DatasetXian Xu, Aidong Zhang. iccS 2006: 670-677 [doi]

2005

SynchRuler: A Rule-Based Flexible Synchronization Model with Model CheckingRamazan Savas Aygün, Aidong Zhang. tkde, 17(12):1706-1720, 2005. [doi]

Exploiting anarchy in networks: a game-theoretic approach to combining fairness and throughputSreenivas Gollapudi, D. Sivakumar, Aidong Zhang. infocom 2005: 2147-2158 [doi]

An Interactive Approach to Mining Gene Expression DataDaxin Jiang, Jian Pei, Aidong Zhang. tkde, 17(10):1363-1378, 2005. [doi]

A General Approach to Mining Quality Pattern-Based Clusters from Microarray DataDaxin Jiang, Jian Pei, Aidong Zhang. dasfaa 2005: 188-200 [doi]

Integration of multidimensional geospatial information for coastal management and decision-makingRon Li, Keith W. Bedford, C. K. Shum, Xutong Niu, Feng Zhou, Vasilia Velissariou, J. Raul Ramirez, Aidong Zhang. DG.O 2005: 231 [doi]

Digitalization of coastal management and decision making supported by multi-dimensional geospatial information and analysisRon Li, Keith W. Bedford, C. K. Shum, Xutong Niu, Feng Zhou, Vasilia Velissariou, J. Raul Ramirez, Aidong Zhang. DG.O 2005: 219-220 [doi]

A Topological Measurement for Weighted Protein Interaction NetworkPengjun Pei, Aidong Zhang. csb 2005: 268-278 [doi]

A Two-Step Approach for Clustering Proteins Based on Protein Interaction ProfilePengjun Pei, Aidong Zhang. bibe 2005: 201-209 [doi]

On mining cross-graph quasi-cliquesJian Pei, Daxin Jiang, Aidong Zhang. kdd 2005: 228-238 [doi]

Mining Cross-Graph Quasi-Cliques in Gene Expression and Protein Interaction DataJian Pei, Daxin Jiang, Aidong Zhang. icde 2005: 353-354 [doi]

A Shrinking-Based Clustering Approach for Multidimensional DataYong Shi, YuQing Song, Aidong Zhang. tkde, 17(10):1389-1403, 2005. [doi]

Towards Exploring Interactive Relationship between Clusters and Outliers in Multi-Dimensional Data AnalysisYong Shi, Aidong Zhang. icde 2005: 518-519 [doi]

Interrelated Two-Way Clustering and its Application on Gene Expression DataChun Tang, Aidong Zhang. ijait, 14(4):577-598, 2005. [doi]

BioStar models of clinical and genomic data for biomedical data warehouse designLiangjiang Wang, Aidong Zhang, Murali Ramanathan. ijbra, 1(1):63-80, 2005. [doi]

Virtual Gene: Using Correlations Between Genes to Select Informative Genes on Microarray DatasetsXian Xu, Aidong Zhang. TCSB, 2:138-152, 2005. [doi]

Virtual Gene: A Gene Selection Algorithm for Sample Classification on Microarray DatasetsXian Xu, Aidong Zhang. iccS 2005: 1038-1045 [doi]

Selecting Informative Genes from Microarray Dataset by Incorporating Gene OntologyXian Xu, Aidong Zhang. bibe 2005: 241-245 [doi]

2004

Digitalization of Coastal Management and Decision Making Supported by Multi-Dimensional Geospatial Information and AnalysisRongxing (Ron) Li, Keith W. Bedford, C. K. Shum, J. Raul Ramirez, Aidong Zhang. DG.O 2004: [doi]

Sprite pyramid for videos and images having finite-depth scenesRamazan Savas Aygün, Aidong Zhang. icmcs 2004: 795-798

Integrating virtual camera controls into digital videoRamazan Savas Aygün, Aidong Zhang. icmcs 2004: 1503-1506

Mining coherent gene clusters from gene-sample-time microarray dataDaxin Jiang, Jian Pei, Murali Ramanathan, Chun Tang, Aidong Zhang. kdd 2004: 430-439 [doi]

GPX: Interactive Mining of Gene Expression DataDaxin Jiang, Jian Pei, Aidong Zhang. VLDB 2004: 1249-1252 [doi]

Cluster Analysis for Gene Expression Data: A SurveyDaxin Jiang, Chun Tang, Aidong Zhang. tkde, 16(11):1370-1386, 2004. [doi]

An Adaptive Density-Based Clustering Algorithm for Spatial Database with NoiseDaoying Ma, Aidong Zhang. icdm 2004: 467-470 [doi]

Spatial Technologies for Coastal ManagementXutong Niu, Xian Xu, Alok Srivastava, Chung-yen Kuo, Vasilia Velissariou, Ron Li, Keith W. Bedford, C. K. Shum, J. Raul Ramirez, Aidong Zhang. DG.O 2004: [doi]

A Shrinking-Based Dimension Reduction Approach for Multi-Dimensional Data AnalysisYong Shi, Aidong Zhang. ssdbm 2004: 427-428 [doi]

ESPD: a pattern detection model underlying gene expression profilesChun Tang, Aidong Zhang, Murali Ramanathan. bioinformatics, 20(6):829-838, 2004. [doi]

PatternQuest: learning patterns of interest using relevance feedback in multimedia information retrievalYimin Wu, Aidong Zhang. icmcs 2004: 261-264

Feature Selection for Classifying High-Dimensional Numerical DataYimin Wu, Aidong Zhang. cvpr 2004: 251-258 [doi]

Interactive pattern analysis for relevance feedback in multimedia information retrievalYimin Wu, Aidong Zhang. mms, 10(1):41-55, 2004. [doi]

VizStruct: exploratory visualization for gene expression profilingLi Zhang, Aidong Zhang, Murali Ramanathan. bioinformatics, 20(1):85-92, 2004.

Very Large Scale Multidimensional Data Management and Retrieval for USGS and NIMA ImageryAidong Zhang, Wei Wang, David M. Mark. DG.O 2004: [doi]

2003

Towards interactive exploration of gene expression patternsDaxin Jiang, Jian Pei, Aidong Zhang. sigkdd, 5(2):79-90, 2003. [doi]

Interactive exploration of coherent patterns in time-series gene expression dataDaxin Jiang, Jian Pei, Aidong Zhang. kdd 2003: 565-570 [doi]

DHC: A Density-Based Hierarchical Clustering Method for Time Series Gene Expression DatDaxin Jiang, Jian Pei, Aidong Zhang. bibe 2003: 393-400 [doi]

Integration of Multi-Source Spatial Information for Coastal Management and Decision MakingRon Li, Keith W. Bedford, C. K. Shum, J. Raul Ramirez, Aidong Zhang. DG.O 2003: [doi]

A Spatio-Temporal Decision Making System for Coastal Change Monitoring and Coastal ManagementRuijin Ma, Tarig Ali, Xutong Niu, Vasilia Velissariou, Kai-chien (Kevin) Cheng, Chung-yen Kuo, Xian Xu, Ahmed Elaksher, Ron Li, Keith W. Bedford, C. K. Shum, J. Raul Ramirez, Aidong Zhang. DG.O 2003: [doi]

A Shrinking-Based Approach for Multi-Dimensional Data AnalysisYong Shi, YuQing Song, Aidong Zhang. VLDB 2003: 440-451 [doi]

Automatic Annotation and Retrieval of ImagesYuQing Song, Wei Wang, Aidong Zhang. www, 6(2):209-231, 2003.

Analyzing scenery images by monotonic treeYuQing Song, Aidong Zhang. mms, 8(6):495-511, 2003. [doi]

Mining multiple phenotype structures underlying gene expression profilesChun Tang, Aidong Zhang. CIKM 2003: 418-425 [doi]

Mining phenotypes and informative genes from gene expression dataChun Tang, Aidong Zhang, Jian Pei. kdd 2003: 655-660 [doi]

Interrelated Clustering: An Approach for Gene Expression Data AnalysisChun Tang, Li Zhang, Aidong Zhang, Murali Ramanathan. In Computational Biology and Genome Informatics. pages 183-206, 2003.

SemView: A Semantic-sensitive Distributed Image Retrieval SystemWei Wang, Yimin Wu, Aidong Zhang. DG.O 2003: [doi]

Adaptive Pattern Discovery for Interactive Multimedia RetrievalYimin Wu, Aidong Zhang. cvpr 2003: 649-655 [doi]

ClusterTree: Integration of Cluster Representation and Nearest-Neighbor Search for Large Data Sets with High DimensionsDantong Yu, Aidong Zhang. tkde, 15(5):1316-1337, 2003. [doi]

Introduction to the Special Issue on BioinformaticsAidong Zhang. dpd, 13(1):5-6, 2003.

Enhanced visualization of time series through higher fourier harmonicsLi Zhang, Aidong Zhang, Murali Ramanathan. kdd 2003: 49-56 [doi]

VizCluster and its Application on Classifying Gene Expression DataLi Zhang, Chun Tang, YuQing Song, Aidong Zhang, Murali Ramanathan. dpd, 13(1):73-97, 2003.

Fourier Harmonic Approach for Visualizing Temporal Patterns of Gene Expression DataLi Zhang, Aidong Zhang, Murali Ramanathan. csb 2003: 137-147 [doi]

Introduction to the Special Issue on Content-Based Image Retrieval (CBIR) Guest EditorsAidong Zhang, HongJiang Zhang. mms, 8(6):493-494, 2003. [doi]

2002

Global motion estimation from semi-dynamic video using motion sensorsRamazan Savas Aygün, Aidong Zhang. icip 2002: 273-276

PLUS: a probe-loss utilization streaming mechanism for distributed multimedia presentation systemsMarkus Mielke, Ramazan Savas Aygün, YuQing Song, Aidong Zhang. tmm, 4(4):561-577, 2002. [doi]

Monotonic TreeYuQing Song, Aidong Zhang. dgci 2002: 114-123 [doi]

Automatic Annotation and Retrieval of ImagesYuQing Song, Wei Wang, Aidong Zhang. vdb 2002: 267-280

::::Webview::::: A Distributed Geographical Image Retrieval SystemWei Wang, Daoying Ma, Yimin Wu, Aidong Zhang, David M. Mark. DG.O 2002: [doi]

FindOut: Finding Outliers in Very Large DatasetsDantong Yu, Gholamhosein Sheikholeslami, Aidong Zhang. kais, 4(4):387-412, 2002. [doi]

An adaptive texture image retrieval system using waveletsBin Zhang, Catalin I. Tomai, Aidong Zhang. icarcv 2002: 1210-1215 [doi]

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