Carlos Oscar Sánchez Sorzano

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Viewing Publication 1 - 44 from 44

2022

PDBe-KB: collaboratively defining the biological context of structural dataMihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda 0001, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar. nar, 50(D1):534-542, 2022. [doi]

2021

3DBionotes COVID-19 editionJosé Ramón Macías, Rubén Sánchez García, Pablo Conesa, Erney Ramírez-Aportela, Marta Martínez, Carlos Wert-Carvajal, Alberto M. Parra-Perez, Joan Segura Mora, Sam Horrell, Andrea Thorn, Carlos Oscar Sánchez Sorzano, José María Carazo. bioinformatics, 37(22):4258-4260, November 2021. [doi]

2020

2019

BIPSPI: a method for the prediction of partner-specific protein-protein interfacesRubén Sánchez García, Carlos Oscar Sánchez Sorzano, José María Carazo, Joan Segura. bioinformatics, 35(3):470-477, 2019. [doi]

3DBIONOTES v3.0: crossing molecular and structural biology data with genomic variationsJoan Segura, Rubén Sánchez García, Carlos Oscar Sánchez Sorzano, José María Carazo. bioinformatics, 35(18):3512-3513, 2019. [doi]

A GPU acceleration of 3-D Fourier reconstruction in cryo-EMDavid Strelák, Carlos Oscar Sánchez Sorzano, José María Carazo, Jiri Filipovic. ijhpca, 33(5), 2019. [doi]

2018

Reconstruction From Multiple Particles for 3D Isotropic Resolution in Fluorescence MicroscopyDenis Fortun, Paul Guichard, Virginie Hamel, Carlos Oscar Sánchez Sorzano, Niccolo Banterle, Pierre Gonczy, Michael Unser. tmi, 37(5):1235-1246, 2018. [doi]

2017

3DBIONOTES v2.0: a web server for the automatic annotation of macromolecular structuresJoan Segura, Rubén Sánchez García, Marta Martínez, Jesús Cuenca Alba, Daniel Tabas-Madrid, Carlos Oscar Sánchez Sorzano, José María Carazo. bioinformatics, 33(22):3655-3657, 2017. [doi]

2016

System models for PET statistical iterative reconstruction: A reviewAna Iriarte, Roberto Marabini, Samuel Matej, Carlos Oscar Sánchez Sorzano, Robert M. Lewitt. cmig, 48:30-48, 2016. [doi]

Coarse-Graining of Volumes for Modeling of Structure and Dynamics in Electron Microscopy: Algorithm to Automatically Control Accuracy of ApproximationSlavica Jonic, Carlos Oscar Sánchez Sorzano. jstsp, 10(1):161-173, 2016. [doi]

A Guided Tour of Selected Image Processing and Analysis Methods for Fluorescence and Electron MicroscopyCharles Kervrann, Carlos Oscar Sánchez Sorzano, Scott T. Acton, Jean-Christophe Olivo-Marin, Michael Unser. jstsp, 10(1):6-30, 2016. [doi]

Introduction to the Issue on Advanced Signal Processing in Microscopy and Cell ImagingCharles Kervrann, Scott T. Acton, Jean-Christophe Olivo-Marin, Carlos Oscar Sánchez Sorzano, Michael Unser. jstsp, 10(1):3-5, 2016. [doi]

2015

Iterative reconstruction for pet scanners with continuous scintillatorsAna Iriarte, Gabriel Caffarena, Mariano Lopez-Fernandez, Rodrigo García-Carmona, Abraham Otero, Carlos Oscar Sánchez Sorzano, Roberto Marabini. embc 2015: 2259-2262 [doi]

Undergraduate Students Compete in the IEEE Signal Processing Cup: Part 1 [sp Education]Kin-Man Lam, Carlos Oscar Sánchez Sorzano, Zhilan Zhang, Patrizio Campisi. spm, 32(4):123-125, 2015. [doi]

Using neighborhood cohesiveness to infer interactions between protein domainsJoan Segura, Carlos Oscar Sánchez Sorzano, Jesús Cuenca Alba, Patrick Aloy, José María Carazo. bioinformatics, 31(15):2545-2552, 2015. [doi]

NFFinder: an online bioinformatics tool for searching similar transcriptomics experiments in the context of drug repositioningJavier Setoain, Mònica Franch, Marta Martínez, Daniel Tabas-Madrid, Carlos Oscar Sánchez Sorzano, Annette Bakker, Eduardo Gonzalez-Couto, Juan Elvira, Alberto D. Pascual-Montano. nar, 43(Webserver-Issue), 2015. [doi]

2014

2D and 3D Alignment for Electron Microscopy via Graphics Processing UnitsEduardo Garcia de La Cueva, Miguel Mateo de La Puente, Alessandro Deideri, Ana Iriarte, Carlos Oscar Sánchez Sorzano, Gabriel Caffarena. iwbbio 2014: 960-971 [doi]

Elastic image registration to fully explore macromolecular dynamics by electron microscopyQiyu Jin, Carlos Oscar Sánchez Sorzano, Isabelle Callebaut, Florence Tama, Slavica Jonic. icip 2014: 2075-2079 [doi]

Comparing scientific performance among equalsCarlos Oscar Sánchez Sorzano, Javier Vargas, Gabriel Caffarena-Fernández, Ana Iriarte. scientometrics, 101(3):1731-1745, 2014. [doi]

Outlier detection for single particle analysis in Electron MicroscopyCarlos Oscar Sánchez Sorzano, Javier Vargas, José Miguel de La Rosa-Trevén, Airen Zaldívar-Peraza, Joaquín Otón, Vahid Abrishami, Ignacio Foche, Roberto Marabini, Gabriel Caffarena, Jose M. Caraza. iwbbio 2014: 950-959 [doi]

An image processing approach to the simulation of electron microscopy volumes of atomic structuresCarlos Oscar Sánchez Sorzano, Javier Vargas, Joaquín Otón, Vahid Abrishami, José Miguel de la Rosa-Trevín, S. del Riego, A. Fernandez-Alderete, C. Martinez-Rey, Roberto Marabini, José María Carazo. icip 2014: 2095-2099 [doi]

Efficient initial volume determination from electron microscopy images of single particlesJavier Vargas, Ana-Lucia Álvarez-Cabrera, Roberto Marabini, José María Carazo, Carlos Oscar Sánchez Sorzano. bioinformatics, 30(20):2891-2898, 2014. [doi]

2013

2012

Image processing for Cellular tomography using soft X-raysCarlos Oscar Sánchez Sorzano, Joaquín Otón, Jesús Cuenca Alba, Airen Zaldivar-Perez, Gabriel Caffarena, Javier Sanchez-Jimenez, Cédric Messaoudi, Sergio Marco, Roberto Marabini, José María Carazo. isbi 2012: 1322 [doi]

2010

XMSF: Structure-preserving noise reduction and pre-segmentation in microscope tomographyJose-Roman Bilbao-Castro, Carlos Oscar Sánchez Sorzano, Inmaculada García, José-Jesús Fernández. bioinformatics, 26(21):2786-2787, 2010. [doi]

2008

Flexible image registration for the identification of best fitted protein models in 3D-EM mapsLaura Fernandez-de-Manuel, María J. Ledesma-Carbayo, Julian Atienza-Herrero, Carlos Oscar Sánchez Sorzano, José María Carazo, Andrés Santos. isbi 2008: 983-986 [doi]

Volumetric restrictions in single particle 3DEM reconstructionCarlos Oscar Sánchez Sorzano, Javier A. Velázquez-Muriel, Roberto Marabini, Gabor T. Herman, José María Carazo. PR, 41(2):616-626, 2008. [doi]

2007

TomoJ: tomography software for three-dimensional reconstruction in transmission electron microscopyCédric Messaoudi, Thomas Boudier, Carlos Oscar Sánchez Sorzano, Sergio Marco. bmcbi, 8, 2007. [doi]

2006

Consistent and Elastic Registration of Histological Sections Using Vector-Spline RegularizationIgnacio Arganda-Carreras, Carlos Oscar Sánchez Sorzano, Roberto Marabini, José María Carazo, Carlos Ortiz-de-Solorzano, Jan Kybic. eccv 2006: 85-95 [doi]

Image processing and 3-D reconstruction in electron microscopyJosé-Jesús Fernández, Carlos Oscar Sánchez Sorzano, Roberto Marabini, José María Carazo. spm, 23(3):84-94, 2006. [doi]

Improved Bayesian image denoising based on wavelets with applications to electron microscopyCarlos Oscar Sánchez Sorzano, E. Ortiz, M. Lopez, J. Rodrigo. PR, 39(6):1205-1213, 2006. [doi]

Optimization problems in electron microscopy of single particlesCarlos Oscar Sánchez Sorzano, Roberto Marabini, Alberto D. Pascual-Montano, Sjors H. W. Scheres, José María Carazo. anor, 148(1):133-165, 2006. [doi]

Molecular image registration using mutual information and differential evolution optimizationBartosz Telenczuk, María J. Ledesma-Carbayo, Javier A. Velázquez-Muriel, Carlos Oscar Sánchez Sorzano, José María Carazo, Andrés Santos. isbi 2006: 844-847 [doi]

2005

Grid Computing in 3D-EM Image Processing Using XmippSjors H. W. Scheres, A. J. Merino, Carlos Oscar Sánchez Sorzano, José María Carazo. cbms 2005: 561-563 [doi]

Multiobjective algorithm parameter optimization using multivariate statistics in three-dimensional electron microscopy reconstructionCarlos Oscar Sánchez Sorzano, Roberto Marabini, Gabor T. Herman, José María Carazo. PR, 38(12):2587-2601, 2005. [doi]

2004

Phan3D: design of biological phantoms in 3D electron microscopyJose-Roman Bilbao-Castro, Carlos Oscar Sánchez Sorzano, Inmaculada García, José-Jesús Fernández. bioinformatics, 20(17):3286-3288, 2004. [doi]

3-D reconstruction of 2-D crystals in real spaceRoberto Marabini, Carlos Oscar Sánchez Sorzano, Samuel Matej, José-Jesús Fernández, José María Carazo, Gabor T. Herman. TIP, 13(4):549-561, 2004. [doi]

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