Cezary Czaplewski - researchr alias

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Viewing Publication 1 - 23 from 23

2024

Assessment of Two Restraint Potentials for Coarse-Grained Chemical-Cross-Link-Assisted Modeling of Protein StructuresMateusz Lesniewski, Maciej Pyrka, Cezary Czaplewski, Nguyen Truong Co, Yida Jiang, Zhou Gong, Chun Tang, Adam Liwo. jcisd, 64(4):1377-1393, February 2024. [doi]

2023

2021

UNRES-Dock - protein-protein and peptide-protein docking by coarse-grained replica-exchange MD simulationsPawel Krupa, Agnieszka S. Karczynska, Magdalena A. Mozolewska, Adam Liwo, Cezary Czaplewski. bioinformatics, 37(11):1613-1615, 2021. [doi]

2020

2018

UNRES server for physics-based coarse-grained simulations and prediction of protein structure, dynamics and thermodynamicsCezary Czaplewski, Agnieszka Karczynska, Adam K. Sieradzan, Adam Liwo. nar, 46(Webserver-Issue), 2018. [doi]

High Performance Computing with Coarse Grained Model of Biological MacromoleculesEmilia A. Lubecka, Adam K. Sieradzan, Cezary Czaplewski, Pawel Krupa, Adam Liwo. superfri, 5(2):63-75, 2018. [doi]

2017

Ergodicity and model quality in template-restrained canonical and temperature/Hamiltonian replica exchange coarse-grained molecular dynamics simulations of proteinsAgnieszka Karczynska, Cezary Czaplewski, Pawel Krupa, Magdalena A. Mozolewska, Keehyoung Joo, Jooyoung Lee, Adam Liwo. jcc, 38(31):2730-2746, 2017. [doi]

2016

2015

2010

Towards Temperature Dependent Coarse-grained Potential of Side-chain Interactions for Protein Folding SimulationsStanislaw Oldziej, Cezary Czaplewski, Adam Liwo, Harold A. Scheraga. bibe 2010: 263-266 [doi]

2006

A Hierarchical Multiscale Approach to Protein Structure Prediction: Production of Low-Resolution Packing Arrangements of Helices and Refinement of the Best Models with a United-Residue Force FieldMaurizio Chinchio, Cezary Czaplewski, Stanislaw Oldziej, Harold A. Scheraga. mmas, 5(4):1175-1195, 2006. [doi]

Meta-computations on the CLUSTERIX GridRoman Wyrzykowski, Norbert Meyer, Tomasz Olas, Lukasz Kuczynski, Bogdan Ludwiczak, Cezary Czaplewski, Stanislaw Oldziej. para 2007: 489-500 [doi]

2005

An efficient molecular docking using conformational space annealingKyoungrim Lee, Cezary Czaplewski, Seung-Yeon Kim, Jooyoung Lee. jcc, 26(1):78-87, 2005. [doi]

Protein structure prediction with the UNRES force-field using Replica-Exchange Monte Carlo-with-Minimization; Comparison with MCM, CSA, and CFMCMarian Nanias, Maurizio Chinchio, Stanislaw Oldziej, Cezary Czaplewski, Harold A. Scheraga. jcc, 26(14):1472-1486, 2005. [doi]

2002

Evolution of physics-based methodology for exploring the conformational energy landscape of proteinsHarold A. Scheraga, Jaroslaw Pillardy, Adam Liwo, Jooyoung Lee, Cezary Czaplewski, Daniel R. Ripoll, William J. Wedemeyer, Yelena A. Arnautova. jcc, 23(1):28-34, 2002. [doi]

2000

UNRES: a united-residue force field for energy-based prediction of protein structure - orgin and significance of multibody termsAdam Liwo, Jaroslaw Pillardy, Cezary Czaplewski, Jooyoung Lee, Daniel R. Ripoll, Malgorzata Groth, Sylwia Rodziewicz-Motowidlo, Rajmund Kazmierkiewicz, Ryszard J. Wawak, Stanislaw Oldziej, Harold A. Scheraga. recomb 2000: 193-200 [doi]

1999

Essential dynamics/factor analysis for the interpretation of molecular dynamics trajectoriesRajmund Kazmierkiewicz, Cezary Czaplewski, B. Lammek, Jerzy Ciarkowski. jcamd, 13(1):21-33, 1999. [doi]

1998

Molecular modeling of the human vasopressin V2 receptor/agonist complexCezary Czaplewski, Rajmund Kazmierkiewicz, Jerzy Ciarkowski. jcamd, 12(3):275-287, 1998. [doi]

United-residue force field for off-lattice protein-structure simulations: III. Origin of backbone hydrogen-bonding cooperativity in united-residue potentialsAdam Liwo, Rajmund Kazmierkiewicz, Cezary Czaplewski, Malgorzata Groth, Stanislaw Oldziej, Ryszard J. Wawak, Shelly Rackovsky, Matthew R. Pincus, Harold A. Scheraga. jcc, 19(3):259-276, 1998. [doi]

1997

Molecular modeling of the neurophysin I/oxytocin complexRajmund Kazmierkiewicz, Cezary Czaplewski, B. Lammek, Jerzy Ciarkowski. jcamd, 11(1):9-20, 1997. [doi]

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