Christine A. Orengo - researchr alias

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2011

Extending CATH: increasing coverage of the protein structure universe and linking structure with functionAlison L. Cuff, Ian Sillitoe, Tony Lewis, Andrew B. Clegg, Robert Rentzsch, Nicholas Furnham, Marialuisa Pellegrini-Calace, David T. Jones, Janet M. Thornton, Christine A. Orengo. nar, 39(Database-Issue):420-426, 2011. [doi]

2010

Gene3D: merging structure and function for a Thousand genomesJonathan Lees, Corin Yeats, Oliver Redfern, Andrew B. Clegg, Christine A. Orengo. nar, 38(Database-Issue):296-300, 2010. [doi]

A fast and automated solution for accurately resolving protein domain architecturesCorin Yeats, Oliver Redfern, Christine A. Orengo. bioinformatics, 26(6):745-751, 2010. [doi]

2009

The CATH classification revisited - architectures reviewed and new ways to characterize structural divergence in superfamiliesAlison L. Cuff, Ian Sillitoe, Tony Lewis, Oliver Redfern, Richard Garratt, Janet M. Thornton, Christine A. Orengo. nar, 37(Database-Issue):310-314, 2009. [doi]

An integrated approach to the interpretation of Single Amino Acid Polymorphisms within the framework of CATH and Gene3DJosé M. G. Izarzugaza, Anja Baresic, Lisa E. M. McMillan, Corin Yeats, Andrew B. Clegg, Christine A. Orengo, Andrew C. R. Martin, Alfonso Valencia. bmcbi, 10(S-8):5, 2009. [doi]

2008

LigASite - a database of biologically relevant binding sites in proteins with known ::::apo::::-structuresBenoit H. Dessailly, Marc F. Lensink, Christine A. Orengo, Shoshana J. Wodak. nar, 36(Database-Issue):667-673, 2008. [doi]

FFPred: an integrated feature-based function prediction server for vertebrate proteomesAnna E. Lobley, Timothy Nugent, Christine A. Orengo, David T. Jones. nar, 36(Web-Server-Issue):297-302, 2008. [doi]

Gene3D: comprehensive structural and functional annotation of genomesCorin Yeats, Jonathan Lees, Adam Reid, Paul Kellam, Nigel J. Martin, Xinhui Liu, Christine A. Orengo. nar, 36(Database-Issue):414-418, 2008. [doi]

2007

The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolutionLesley H. Greene, Tony E. Lewis, Sarah Addou, Alison Cuff, Timothy Dallman, Mark Dibley, Oliver Redfern, Frances M. G. Pearl, Rekha Nambudiry, Adam Reid, Ian Sillitoe, Corin Yeats, Janet M. Thornton, Christine A. Orengo. nar, 35(Database-Issue):291-297, 2007. [doi]

Establishing a major cause of discrepancy in the calibration of Affymetrix GeneChipsAndrew P. Harrison, Caroline E. Johnston, Christine A. Orengo. bmcbi, 8, 2007. [doi]

Towards a comprehensive structural coverage of completed genomes: a structural genomics viewpointRussell L. Marsden, Tony A. Lewis, Christine A. Orengo. bmcbi, 8, 2007. [doi]

New developments in the InterPro databaseNicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Virginie Buillard, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Louise Daugherty, Mark Dibley, Robert D. Finn, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicolas Hulo, Sarah Hunter, Daniel Kahn, Alexander Kanapin, Anish Kejariwal, Alberto Labarga, Petra S. Langendijk-Genevaux, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Christine A. Orengo, Robert Petryszak, Jeremy D. Selengut, Christian J. A. Sigrist, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats. nar, 35(Database-Issue):224-228, 2007. [doi]

Methods of remote homology detection can be combined to increase coverage by 10 in the midnight zoneAdam James Reid, Corin Yeats, Christine A. Orengo. bioinformatics, 23(18):2353-2360, 2007. [doi]

2006

2005

2004

A practical and robust sequence search strategy for structural genomics target selectionJames E. Bray, Russell L. Marsden, Stuart C. G. Rison, Alexei Savchenko, Aled M. Edwards, Janet M. Thornton, Christine A. Orengo. bioinformatics, 20(14):2288-2295, 2004. [doi]

Consensus Clustering and Functional Interpretation of Gene Expression DataPaul Kellam, Stephen Swift, Allan Tucker, Veronica Vinciotti, Nigel J. Martin, Christine A. Orengo, Xiaohui Liu. jbi 2004: 6

A structural perspective on genome evolutionDavid Lee, Alastair Grant, Ian Sillitoe, Mark Dibley, Juan Garcia Ranea, Christine A. Orengo. recomb 2004: 336 [doi]

EyeSite: a semi-automated database of protein families in the eyeDavid A. Lee, Sandrine Fefeu, Adrian A. Edo-Ukeh, Christine A. Orengo, Christine Slingsby. nar, 32(Database-Issue):148-152, 2004.

BioMap: Gene Family based Integration of Heterogeneous Biological Databases Using AutoMed MetadataMichael Maibaum, Galia Rimon, Christine A. Orengo, Nigel J. Martin, Alexandra Poulovassilis. dexaw 2004: 384-388 [doi]

Microeconomic Principles Explain an Optimal Genome Size in BacteriaJuan Garcia Ranea, Alastair Grant, Janet M. Thornton, Christine A. Orengo. jbi 2004: 43

2003

2002

A framework for modelling virus gene expression dataPaul Kellam, Xiaohui Liu, Nigel J. Martin, Christine A. Orengo, Stephen Swift, Allan Tucker. ida, 6(3):267-279, 2002. [doi]

PFDB: a generic protein family database integrating the CATH domain structure database with sequence based protein family resourcesAdrian J. Shepherd, Nigel J. Martin, Roger G. Johnson, Paul Kellam, Christine A. Orengo. bioinformatics, 18(12):1666-1672, 2002.

2001

2000

Assigning genomic sequences to CATHFrances M. G. Pearl, David Lee, James E. Bray, Ian Sillitoe, Annabel E. Todd, Andrew P. Harrison, Janet M. Thornton, Christine A. Orengo. nar, 28(1):277-282, 2000.

1999

The CATH Database provides insights into protein structure/function relationshipsChristine A. Orengo, Frances M. G. Pearl, James E. Bray, Annabel E. Todd, A. C. Martin, Loredana Lo Conte, Janet M. Thornton. nar, 27(1):275-279, 1999.

1998

[Invited Lecture] Protein Folds and FunctionsJanet M. Thornton, Andrew C. R. Martin, Christine A. Orengo, Duncan Milburn, Roman A. Laskowski. gcb 1998:

1996

A Protein Structure Comparison MethodologyNigel P. Brown, Christine A. Orengo, William R. Taylor. CANDC, 20(3):359-380, 1996. [doi]