Christos A. Ouzounis - researchr alias

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2009

Stratification of co-evolving genomic groups using ranked phylogenetic profilesShiri Freilich, Leon Goldovsky, Assaf Gottlieb, Eric Blanc, Sophia Tsoka, Christos A. Ouzounis. bmcbi, 10:355, 2009. [doi]

2008

PuReD-MCL: a graph-based PubMed document clustering methodologyTheodosios Theodosiou, Nikos Darzentas, Lefteris Angelis, Christos A. Ouzounis. bioinformatics, 24(17):1935-1941, 2008. [doi]

2007

CORRIE: enzyme sequence annotation with confidence estimatesBenjamin Audit, Emmanuel D. Levy, Walter R. Gilks, Leon Goldovsky, Christos A. Ouzounis. bmcbi, 8(S-4), 2007. [doi]

2006

Highly consistent patterns for inherited human diseases at the molecular levelNúria López-Bigas, Benjamin J. Blencowe, Christos A. Ouzounis. bioinformatics, 22(3):269-277, 2006. [doi]

2005

CoGenT++: an extensive and extensible data environment for computational genomicsLeon Goldovsky, Paul Janssen, Dag G. Ahrén, Benjamin Audit, Ildefonso Cases, Nikos Darzentas, Anton J. Enright, Núria López-Bigas, José M. Peregrin-Alvarez, Mike Smith, Sophia Tsoka, Victor Kunin, Christos A. Ouzounis. bioinformatics, 21(19):3806-3810, 2005. [doi]

Clustering the annotation space of proteinsVictor Kunin, Christos A. Ouzounis. bmcbi, 6:24, 2005. [doi]

The properties of protein family space depend on experimental designVictor Kunin, Sarah A. Teichmann, Martijn A. Huynen, Christos A. Ouzounis. bioinformatics, 21(11):2618-2622, 2005. [doi]

Probabilistic annotation of protein sequences based on functional classificationsEmmanuel D. Levy, Christos A. Ouzounis, Walter R. Gilks, Benjamin Audit. bmcbi, 6:302, 2005. [doi]

MagicMatch - cross-referencing sequence identifiers across databasesMike Smith, Victor Kunin, Leon Goldovsky, Anton J. Enright, Christos A. Ouzounis. bioinformatics, 21(16):3429-3430, 2005. [doi]

2004

Robustness of Metabolic Map ReconstructionDag G. Ahrén, Christos A. Ouzounis. jbcb, 2(3):589-593, 2004. [doi]

Properties of Genes involved in Human Genetic DiseaseNúria López-Bigas, Christos A. Ouzounis. jbi 2004: 45-46

2003

COmplete GENome Tracking (COGENT): A Flexible Data Environment for Computational GenomicsPaul Janssen, Anton J. Enright, Benjamin Audit, Ildefonso Cases, Leon Goldovsky, Nicola Harte, Victor Kunin, Christos A. Ouzounis. bioinformatics, 19(11):1451-1452, 2003.

Comparison of sequence masking algorithms and the detection of biased protein sequence regionsDavid P. Kreil, Christos A. Ouzounis. bioinformatics, 19(13):1672-1681, 2003.

GeneTRACE - Reconstruction of Gene Content of Ancestral SpeciesVictor Kunin, Christos A. Ouzounis. bioinformatics, 19(11):1412-1416, 2003.

Early bioinformatics: the birth of a discipline - a personal viewChristos A. Ouzounis, Alfonso Valencia. bioinformatics, 19(17):2176-2190, 2003.

PseuRECA: genome annotation and gene context analysis for Pseudomonas aeruginosa PAO1Christian Weinel, Maria D. Ermolaeva, Christos A. Ouzounis. bioinformatics, 19(12):1457-1460, 2003.

2002

Modeling the percolation of annotation errors in a database of protein sequencesWalter R. Gilks, Benjamin Audit, Daniela De Angelis, Sophia Tsoka, Christos A. Ouzounis. bioinformatics, 18(12):1641-1649, 2002.

Bioinformatics and the theoretical foundations of molecular biologyChristos A. Ouzounis. bioinformatics, 18(3):377-378, 2002.

2001

Transcription-associated protein families are primarily taxon-specificRichard M. R. Coulson, Anton J. Enright, Christos A. Ouzounis. bioinformatics, 17(1):95-97, 2001.

BioLayout-an automatic graph layout algorithm for similarity visualizationAnton J. Enright, Christos A. Ouzounis. bioinformatics, 17(9):853-854, 2001.

TEXTQUEST: Document Clustering of MEDLINE Abstracts For Concept Discovery In Molecular BiologyIoannis Iliopoulos, Anton J. Enright, Christos A. Ouzounis. psb 2001: 384-395 [doi]

2000

1999

Automated genome sequence analysis and annotationMiguel A. Andrade, N. P. Brown, Christophe Leroy, S. Hörsch, Antoine de Daruvar, C. Reich, A. Franchini, Javier Tamames, Alfonso Valencia, Christos A. Ouzounis, Chris Sander. bioinformatics, 15(5):391-412, 1999.

Automatic Extraction of Biological Information from Scientific Text: Protein-Protein InteractionsChristian Blaschke, Miguel A. Andrade, Christos A. Ouzounis, Alfonso Valencia. ismb 1999: 60-67

1998

EUCLID: automatic classification of proteins in functional classes by their database annotationsJavier Tamames, Christos A. Ouzounis, Georg Casari, Chris Sander, Alfonso Valencia. bioinformatics, 14(6):542-543, 1998.

1997

1996

HinCyc: A Knowledge Base of the Complete Genome and Metabolic Pathways of H. influenzaePeter D. Karp, Christos A. Ouzounis, Suzanne M. Paley. ismb 1996: 116-124

1995

The Functional Composition of Living Machines as a Design Principle for Artificial OrganismsChristos A. Ouzounis, Alfonso Valencia, Javier Tamames, Peer Bork, Chris Sander. ecal 1995: 843-851

1994

GeneQuiz: A Workbench for Sequence AnalysisMichael Scharf, Reinhard Schneider, Georg Casari, Peer Bork, Alfonso Valencia, Christos A. Ouzounis, Chris Sander. ismb 1994: 348-353