Dan Nettleton - researchr alias

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Viewing Publication 1 - 21 from 21

2023

Adjusting for gene-specific covariates to improve RNA-seq analysisHyeongseon Jeon, Kyu-Sang Lim, Yet Nguyen, Dan Nettleton. bioinformatics, 39(8), August 2023. [doi]

Stability of Random Forests and Coverage of Random-Forest Prediction IntervalsYan Wang, Huaiqing Wu, Dan Nettleton. nips 2023: [doi]

2021

Variable importance assessments and backward variable selection for multi-sample problemsLiuhua Peng, Long Qu, Dan Nettleton. ma, 186:104807, 2021. [doi]

2020

rmRNAseq: differential expression analysis for repeated-measures RNA-seq dataYet Nguyen, Dan Nettleton. bioinformatics, 36(16):4432-4439, 2020. [doi]

Tree aggregation for random forest class probability estimationAndrew J. Sage, Ulrike Genschel, Dan Nettleton. sadm, 13(2):134-150, 2020. [doi]

2019

Sparse model identification and learning for ultra-high-dimensional additive partially linear modelsXinyi Li, Li Wang, Dan Nettleton. ma, 173:204-228, 2019. [doi]

2018

2015

SimSeq: a nonparametric approach to simulation of RNA-sequence datasetsSam Benidt, Dan Nettleton. bioinformatics, 31(13):2131-2140, 2015. [doi]

2014

An improved method for computing q-values when the distribution of effect sizes is asymmetricMegan Orr, Peng Liu, Dan Nettleton. bioinformatics, 30(21):3044-3053, 2014. [doi]

Copy number variation detection using next generation sequencing read countsHeng Wang, Dan Nettleton, Kai Ying. bmcbi, 15:109, 2014. [doi]

2011

An Efficient and Scalable Implementation of SNP-Pair Interaction Testing for Genetic Association StudiesLars Koesterke, Dan Stanzione, Matt Vaughn, Stephen M. Welch, Waclaw Kusnierczyk, Jinliang Yang, Cheng-Ting Yeh, Dan Nettleton, Patrick S. Schnable. ipps 2011: 523-530 [doi]

2008

Identification of differentially expressed gene categories in microarray studies using nonparametric multivariate analysisDan Nettleton, Justin Recknor, James M. Reecy. bioinformatics, 24(2):192-201, 2008. [doi]

2007

Pooling mRNA in microarray experiments and its effect on powerWuyan Zhang, Alicia Carriquiry, Dan Nettleton, Jack C. M. Dekkers. bioinformatics, 23(10):1217-1224, 2007. [doi]

2006

Identifying differentially expressed genes in unreplicated multiple-treatment microarray timecourse experimentsRhonda DeCook, Dan Nettleton, Carol Foster, Eve Syrkin Wurtele. csda, 50(2):518-532, 2006. [doi]

Scanning microarrays at multiple intensities enhances discovery of differentially expressed genesDavid S. Skibbe, Xiujuan Wang, Xuefeng Zhao, Lisa A. Borsuk, Dan Nettleton, Patrick S. Schnable. bioinformatics, 22(15):1863-1870, 2006. [doi]

2005

BarleyBase - an expression profiling database for plant genomicsLishuang Shen, Jian Gong, Rico A. Caldo, Dan Nettleton, Dianne Cook, Roger P. Wise, Julie A. Dickerson. nar, 33(Database-Issue):614-618, 2005. [doi]

2003

Principal Components Regression With Data Chosen Components and Related MethodsJ. T. Gene Hwang, Dan Nettleton. technometrics, 45(1):70-79, 2003. [doi]

2002

Mining MEDLINE: Abstracts, Sentences, or Phrases?Jing Ding, Daniel Berleant, Dan Nettleton, Eve Syrkin Wurtele. psb 2002: 326-337 [doi]

Expression Pattern of Yeast Sporulation: A Case Study for Regulatory Changes after Yeast Genome DuplicationWei Huang, Dan Nettleton, Xun Gu. jcis 2002: 1263-1267

Expression pattern of yeast sporulation: a case study for regulatory changes after yeast genome duplicationWei Huang, Dan Nettleton, Xun Gu. isci, 145(3-4):261-269, 2002. [doi]

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