Deepak Bandyopadhyay - researchr alias

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Viewing Publication 1 - 14 from 14

2019

Scaffold-Based Analytics: Enabling Hit-to-Lead Decisions by Visualizing Chemical Series Linked across Large DatasetsDeepak Bandyopadhyay, Constantine Kreatsoulas, Pat G. Brady, Joseph Boyer, Zangdong He, Genaro Scavello, Tyler Peryea, Ajit Jadhav, Dac-Trung Nguyen, Rajarshi Guha. jcisd, 59(11):4880-4892, 2019. [doi]

2013

Stochastic Proximity Embedding: A Simple, Fast and Scalable Algorithm for Solving the Distance Geometry ProblemDimitris K. Agrafiotis, Deepak Bandyopadhyay, Eric Yang. In Antonio Mucherino, Carlile Lavor, Leo Liberti, Nelson Maculan, editors, Distance Geometry: Theory, Methods, and Applications. pages 291-311, Springer, 2013. [doi]

2010

Functional neighbors: inferring relationships between nonhomologous protein families using family-specific packing motifsDeepak Bandyopadhyay, Jun Huan, Jinze Liu, Jan Prins, Jack Snoeyink, Wei Wang 0010, Alexander Tropsha. titb, 14(5):1137-1143, 2010. [doi]

2009

Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: II. Case studies and applicationsDeepak Bandyopadhyay, Jun Huan, Jan Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha. jcamd, 23(11):785-797, 2009. [doi]

Identification of family-specific residue packing motifs and their use for structure-based protein function prediction: I. Method developmentDeepak Bandyopadhyay, Jun Huan, Jan Prins, Jack Snoeyink, Wei Wang, Alexander Tropsha. jcamd, 23(11):773-784, 2009. [doi]

2008

A self-organizing algorithm for molecular alignment and pharmacophore developmentDeepak Bandyopadhyay, Dimitris K. Agrafiotis. jcc, 29(6):965-982, 2008. [doi]

Functional Neighbors: Inferring Relationships between Non-Homologous Protein Families Using Family-Specific Packing MotifsDeepak Bandyopadhyay, Jun (Luke) Huan, Jinze Liu, Jan Prins, Jack Snoeyink, Wei Wang 0010, Alexander Tropsha. bibm 2008: 199-206 [doi]

2007

Radial Clustergrams: Visualizing the Aggregate Properties of Hierarchical ClustersDimitris K. Agrafiotis, Deepak Bandyopadhyay, Michael Farnum. jcisd, 47(1):69-75, 2007. [doi]

Almost-Delaunay simplices: Robust neighbor relations for imprecise 3D points using CGALDeepak Bandyopadhyay, Jack Snoeyink. comgeo, 38(1-2):4-15, 2007. [doi]

2005

Comparing Graph Representations of Protein Structure for Mining Family-Specific Residue-Based Packing MotifsJun Huan, Deepak Bandyopadhyay, Wei Wang 0010, Jack Snoeyink, Jan Prins, Alexander Tropsha. jcb, 12(6):657-671, 2005. [doi]

2004

Almost-Delaunay simplices: nearest neighbor relations for imprecise pointsDeepak Bandyopadhyay, Jack Snoeyink. soda 2004: 410-419 [doi]

Mining protein family specific residue packing patterns from protein structure graphsJun Huan, Wei Wang 0010, Deepak Bandyopadhyay, Jack Snoeyink, Jan Prins, Alexander Tropsha. recomb 2004: 308-315 [doi]

2001

Dynamic Shader Lamps: Painting on Movable ObjectsDeepak Bandyopadhyay, Ramesh Raskar, Henry Fuchs. ismar 2001: 207-216 [doi]

Shader Lamps: Animating Real Objects With Image-Based IlluminationRamesh Raskar, Greg Welch, Kok-Lim Low, Deepak Bandyopadhyay. rt 2001: 89-102

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