Drena Dobbs - researchr alias

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2011

Predicting MHC-II Binding Affinity Using Multiple Instance RegressionYasser El-Manzalawy, Drena Dobbs, Vasant Honavar. tcbb, 8(4):1067-1079, 2011. [doi]

PRIDB: a protein-RNA interface databaseBenjamin A. Lewis, Rasna R. Walia, Michael Terribilini, Jeff Ferguson, Charles Zheng, Vasant Honavar, Drena Dobbs. nar, 39(Database-Issue):277-282, 2011. [doi]

HomPPI: A Class of Sequence Homology Based Protein-Protein Interface Prediction MethodsLi C. Xue, Drena Dobbs, Vasant Honavar. bmcbi, 12:244, 2011. [doi]

2010

2009

Mixture of experts models to exploit global sequence similarity on biomolecular sequence labelingCornelia Caragea, Jivko Sinapov, Drena Dobbs, Vasant Honavar. bmcbi, 10(S-4), 2009. [doi]

Zinc Finger Database (ZiFDB): a repository for information on C2H2 zinc fingers and engineered zinc-finger arraysFengli Fu, Jeffry D. Sander, Morgan Maeder, Stacey Thibodeau-Beganny, J. Keith Joung, Drena Dobbs, Leslie L. Miller, Daniel F. Voytas. nar, 37(Database-Issue):279-283, 2009. [doi]

2008

2007

Exploring inconsistencies in genome-wide protein function annotations: a machine learning approachCarson M. Andorf, Drena Dobbs, Vasant Honavar. bmcbi, 8, 2007. [doi]

Glycosylation site prediction using ensembles of Support Vector Machine classifiersCornelia Caragea, Jivko Sinapov, Adrian Silvescu, Drena Dobbs, Vasant Honavar. bmcbi, 8, 2007. [doi]

Assessing the Performance of Macromolecular Sequence ClassifiersCornelia Caragea, Jivko Sinapov, Vasant Honavar, Drena Dobbs. bibe 2007: 320-326 [doi]

Zinc Finger Targeter (ZiFiT): an engineered zinc finger/target site design toolJeffry D. Sander, Peter Zaback, J. Keith Joung, Daniel F. Voytas, Drena Dobbs. nar, 35(Web-Server-Issue):599-605, 2007. [doi]

RNABindR: a server for analyzing and predicting RNA-binding sites in proteinsMichael Terribilini, Jeffry D. Sander, Jae-Hyung Lee, Peter Zaback, Robert L. Jernigan, Vasant Honavar, Drena Dobbs. nar, 35(Web-Server-Issue):578-584, 2007. [doi]

Analysis of Protein Protein Dimeric InterfacesFeihong Wu, Fadi Towfic, Drena Dobbs, Vasant Honavar. bibm 2007: 35 [doi]

2006

Predicting DNA-binding sites of proteins from amino acid sequenceChanghui Yan, Michael Terribilini, Feihong Wu, Robert L. Jernigan, Drena Dobbs, Vasant Honavar. bmcbi, 7:262, 2006. [doi]

2005

2004

2003

Automated data-driven discovery of motif-based protein function classifiersXiangyun Wang, Diane Schroeder, Drena Dobbs, Vasant Honavar. isci, 155(1-2):1-18, 2003. [doi]

2002

Discovering Protein Function Classification Rules from Reduced Alphabet Representations of Protein SequencesCarson M. Andorf, Drena Dobbs, Vasant Honavar. jcis 2002: 1200-1206

Data-Driven Discovery of Protein Function Classifiers: Decision Trees Based on MEME Motifs outperform PROSITE Patterns and Profiles on Peptidase FamiliesXiangyun Wang, Diane Schroeder, Drena Dobbs, Vasant Honavar. jcis 2002: 1193-1199

1999

Data-Driven Theory Refinement Using ::::KBDistAl::::Jihoon Yang, Rajesh Parekh, Vasant Honavar, Drena Dobbs. ida 1999: 331-342 [doi]

1994

Modular sequence elements associated with origin regions in eukaryotic chromosomal DNADrena Dobbs, Wen-Ling Shaiu, Robert M. Benbow. nar, 22(13):2479-2489, 1994.