Hongyu Zhao - researchr alias

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2011

COSINE: COndition-SpecIfic sub-NEtwork identification using a global optimization methodHaisu Ma, Eric E. Schadt, Lee M. Kaplan, Hongyu Zhao. bioinformatics, 27(9):1290-1298, 2011. [doi]

Some theoretical properties of Silverman s method for Smoothed functional principal component analysisXin Qi, Hongyu Zhao. ma, 102(4):741-767, 2011. [doi]

Bias Detection and Correction in RNA-Sequencing DataWei Zheng, Lisa M. Chung, Hongyu Zhao. bmcbi, 12:290, 2011. [doi]

2010

A Medical Tracking System for Contrast MediaChuan Dai, Zhelong Wang, Hongyu Zhao. lsms 2010: 525-531 [doi]

Pathway analysis using random forests with bivariate node-split for survival outcomesHerbert Pang, Debayan Datta, Hongyu Zhao. bioinformatics, 26(2):250-258, 2010. [doi]

A real time object tracking system for contrast media injectionZhelong Wang, Chuan Dai, Hongyu Zhao. SMC 2010: 3749-3753 [doi]

2009

Effect of false positive and false negative rates on inference of binding target conservation across different conditions and species from ChIP-chip dataDebayan Datta, Hongyu Zhao. bmcbi, 10, 2009. [doi]

NTAP: for NimbleGen tiling array ChIP-chip data analysisKun He, Xueyong Li, Junli Zhou, Xingwang Deng, Hongyu Zhao, Jingchu Luo. bioinformatics, 25(14):1838-1840, 2009. [doi]

Genotyping and inflated type I error rate in genome-wide association case/control studiesJoshua N. Sampson, Hongyu Zhao. bmcbi, 10, 2009. [doi]

2008

2007

Integrating domain knowledge with statistical and data mining methods for high-density genomic SNP disease association analysisValentin Dinu, Hongyu Zhao, Perry L. Miller. jbi, 40(6):750-760, 2007. [doi]

A new protocol of analyzing isotope-coded affinity tag data from high-resolution LC-MS spectrometryWeichuan Yu, Junfeng Liu, Chris Colangelo, Erol Gulcicek, Hongyu Zhao. CANDC, 31(3):215-221, 2007. [doi]

2006

2005

Case Report: A High Productivity/Low Maintenance Approach to High-performance Computation for Biomedicine: Four Case StudiesNicholas Carriero, Michael V. Osier, Kei-Hoi Cheung, Perry L. Miller, Mark Gerstein, Hongyu Zhao, Baolin Wu, Scott Rifkin, Joseph T. Chang, Heping Zhang, Kevin White, Kenneth Williams, Martin H. Schultz. jamia, 12(1):90-98, 2005. [doi]

Integrating mRNA Decay Information into Co-Regulation StudyLiang Chen, Hongyu Zhao. jcst, 20(4):434-438, 2005. [doi]

Negative correlation between compositional symmetries and local recombination ratesLiang Chen, Hongyu Zhao. bioinformatics, 21(21):3951-3958, 2005. [doi]

A semiparametric approach for marker gene selection based on gene expression dataZhong Guan, Hongyu Zhao. bioinformatics, 21(4):529-536, 2005. [doi]

VitaPad: visualization tools for the analysis of pathway dataMatthew Holford, Naixin Li, Prakash M. Nadkarni, Hongyu Zhao. bioinformatics, 21(8):1596-1602, 2005. [doi]

Detection of DNA copy number alterations using penalized least squares regressionTao Huang, Baolin Wu, Paul Lizardi, Hongyu Zhao. bioinformatics, 21(20):3811-3817, 2005. [doi]

Erratum to A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data : [Comput. Biol. Chem. 29(2005) 47-54]Yinglei Lai, Hongyu Zhao. CANDC, 29(3):258, 2005. [doi]

A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH dataYinglei Lai, Hongyu Zhao. CANDC, 29(1):47-54, 2005. [doi]

Are scale-free networks robust to measurement errors?Nan Lin, Hongyu Zhao. bmcbi, 6:119, 2005. [doi]

Inferring protein-protein interactions through high-throughput interaction data from diverse organismsYin Liu, Nianjun Liu, Hongyu Zhao. bioinformatics, 21(15):3279-3285, 2005. [doi]

Aligning Peaks Across Multiple Mass Spectrometry Data Sets Using A Scale-Space Based ApproachWeichuan Yu, Xiaoye Li, Hongyu Zhao. csb 2005: 126-127 [doi]

HAPLORE: a program for haplotype reconstruction in general pedigrees without recombinationKui Zhang, Fengzhu Sun, Hongyu Zhao. bioinformatics, 21(1):90-103, 2005. [doi]

2004

A statistical method for identifying differential gene-gene co-expression patternsYinglei Lai, Baolin Wu, Liang Chen, Hongyu Zhao. bioinformatics, 20(17):3146-3155, 2004. [doi]

Information assessment on predicting protein-protein interactionsNan Lin, Baolin Wu, Ronald Jansen, Mark Gerstein, Hongyu Zhao. bmcbi, 5:154, 2004. [doi]

A computational approach for ordering signal transduction pathway components from genomics and proteomics DataYin Liu, Hongyu Zhao. bmcbi, 5:158, 2004. [doi]

Handling multiple testing while interpreting microarrays with the Gene Ontology DatabaseMichael V. Osier, Hongyu Zhao, Kei-Hoi Cheung. bmcbi, 5:124, 2004. [doi]

2003

2002

On a Family-Based Haplotype Pattern Mining Method for Linkage Disequilibrium MappingShuanglin Zhang, Kui Zhang, Jinming Li, Hongyu Zhao. psb 2002: 100-111 [doi]

2001

On Relationship Inference Using Gamete Identity by Descent DataHongyu Zhao, Feng Liang. jcb, 8(2):191-200, 2001.