2011
- PUGSVM: a caBIG:::TM::: analytical tool for multiclass gene selection and predictive classificationGuoqiang Yu, Huai Li, Sook S. Ha, Ie-Ming Shih, Robert Clarke, Eric P. Hoffman, Subha Madhavan, Jianhua Xuan, Yue Joseph Wang. bioinformatics, 27(5):736-738, 2011. [doi]
- DDN: a caBIG:::®::: analytical tool for differential network analysisBai Zhang, Ye Tian, Lu Jin, Huai Li, Ie-Ming Shih, Subha Madhavan, Robert Clarke, Eric P. Hoffman, Jianhua Xuan, Leena Hilakivi-Clarke, Yue Wang. bioinformatics, 27(7):1036-1038, 2011. [doi]
2010
2009
- Differential dependency network analysis to identify condition-specific topological changes in biological networksBai Zhang, Huai Li, Rebecca B. Riggins, Ming Zhan, Jianhua Xuan, Zhen Zhang, Eric P. Hoffman, Robert Clarke, Yue Wang. bioinformatics, 25(4):526-532, 2009. [doi]
2008
- caBIG:::TM::: VISDA: Modeling, visualization, and discovery for cluster analysis of genomic dataYitan Zhu, Huai Li, David J. Miller, Zuyi Wang, Jianhua Xuan, Robert Clarke, Eric P. Hoffman, Yue Wang. bmcbi, 9, 2008. [doi]
2007
- VISDA: an open-source caBIG:::TM::: analytical tool for data clustering and beyondJiajing Wang, Huai Li, Yitan Zhu, Malik Yousef, Michael Nebozhyn, Michael M. Showe, Louise C. Showe, Jianhua Xuan, Robert Clarke, Yue Wang. bioinformatics, 23(15):2024-2027, 2007. [doi]
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