Jarek Nieplocha - researchr alias

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2010

Implementation and evaluation of active storage in modern parallel file systemsJuan Piernas Cánovas, Jarek Nieplocha. pc, 36(1):26-47, 2010. [doi]

NWChem: A comprehensive and scalable open-source solution for large scale molecular simulationsMarat Valiev, Eric J. Bylaska, N. Govind, K. Kowalski, Tjerk P. Straatsma, H. J. J. Van Dam, D. Wang, Jarek Nieplocha, Edoardo Aprà, Theresa L. Windus, Wibe A. deJong. cphysics, 181(9):1477-1489, 2010. [doi]

2009

2008

Early experience with out-of-core applications on the Cray XMTDaniel G. Chavarría-Miranda, Andrès Márquez, Jarek Nieplocha, Kristyn J. Maschhoff, Chad Scherrer. ipps 2008: 1-8 [doi]

Scioto: A Framework for Global-View Task ParallelismJames Dinan, Sriram Krishnamoorthy, D. Brian Larkins, Jarek Nieplocha, P. Sadayappan. icpp 2008: 586-593 [doi]

Evaluation of Remote Memory Access Communication on the IBM Blue Gene/P SupercomputerManojkumar Krishnan, Jarek Nieplocha, Michael Blocksome, Brian E. Smith. icppw 2008: 109-115 [doi]

Integrated Data and Task Management for Scientific ApplicationsJarek Nieplocha, Sriram Krishnamoorthy, Marat Valiev, Manojkumar Krishnan, Bruce Palmer, P. Sadayappan. iccS 2008: 20-31 [doi]

Efficient Management of Complex Striped Files in Active StorageJuan Piernas, Jarek Nieplocha. europar 2008: 676-685 [doi]

A framework for characterizing overlap of communication and computation in parallel applicationsAniruddha G. Shet, P. Sadayappan, David E. Bernholdt, Jarek Nieplocha, Vinod Tipparaju. cluster, 11(1):75-90, 2008. [doi]

2007

Using the GA and TAO toolkits for solving large-scale optimization problems on parallel computersSteven Benson, Manojkumar Krishnan, Lois C. McInnes, Jarek Nieplocha, Jason Sarich. TOMS, 33(2):11, 2007. [doi]

A global address space framework for locality aware scheduling of block-sparse computationsSriram Krishnamoorthy, Ümit V. Çatalyürek, Jarek Nieplocha, Atanas Rountev, P. Sadayappan. ipps 2007: 1-8 [doi]

Non-collective parallel I/O for global address space programming modelsSriram Krishnamoorthy, Juan Piernas, Vinod Tipparaju, Jarek Nieplocha, P. Sadayappan. cluster 2007: 41-49 [doi]

Scalable Visual Analytics of Massive Textual DatasetsManojkumar Krishnan, S. Bohn, W. Cowley, Vernon L. Crow, Jarek Nieplocha. ipps 2007: 1-10 [doi]

Evaluating the potential of multithreaded platforms for irregular scientific computationsJarek Nieplocha, Andrès Márquez, John Feo, Daniel G. Chavarría-Miranda, George Chin Jr., Chad Scherrer, Nathaniel Beagley. cf 2007: 47-58 [doi]

Evaluation of active storage strategies for the lustre parallel file systemJuan Piernas, Jarek Nieplocha, Evan J. Felix. sc 2007: 28 [doi]

Transparent system-level migration of PGAS applications using Xen on InfiniBandDaniele Paolo Scarpazza, Patrick Mullaney, Oreste Villa, Fabrizio Petrini, Vinod Tipparaju, D. M. L. Brown, Jarek Nieplocha. cluster 2007: 74-83 [doi]

Probability Convergence in a Multithreaded Counting ApplicationChad Scherrer, Nathaniel Beagley, Jarek Nieplocha, Andrès Márquez, John Feo, Daniel G. Chavarría-Miranda. ipps 2007: 1-5 [doi]

Towards Fault Resilient Global ArraysVinod Tipparaju, Manojkumar Krishnan, Bruce Palmer, Fabrizio Petrini, Jarek Nieplocha. parco 2008: 339-345

Evaluation of Remote Memory Access Communication on the Cray XT3Vinod Tipparaju, Andriy Kot, Jarek Nieplocha, Monika ten Bruggencate, Nikos Chrisochoides. ipps 2007: 1-7 [doi]

2006

Blue Gene system software - Design and implementation of a one-sided communication interface for the IBM eServer Blue Gene® supercomputerMichael Blocksome, Charles Archer, Todd Inglett, Patrick McCarthy, Michael Mundy, Joe Ratterman, A. Sidelnik, Brian E. Smith, George Almási, José G. Castaños, Derek Lieber, José E. Moreira, Sriram Krishnamoorthy, Vinod Tipparaju, Jarek Nieplocha. sc 2006: 120 [doi]

Topology-aware tile mapping for clusters of SMPsDaniel G. Chavarría-Miranda, Jarek Nieplocha, Vinod Tipparaju. cf 2006: 383-392 [doi]

Data management and query - Hypergraph partitioning for automatic memory hierarchy managementSriram Krishnamoorthy, Ümit V. Çatalyürek, Jarek Nieplocha, Atanas Rountev, P. Sadayappan. sc 2006: 98 [doi]

Layout transformation support for the disk resident arrays frameworkSriram Krishnamoorthy, Gerald Baumgartner, Chi-Chung Lam, Jarek Nieplocha, P. Sadayappan. tjs, 36(2):153-170, 2006. [doi]

An extensible global address space framework with decoupled task and data abstractionsSriram Krishnamoorthy, Ümit V. Çatalyürek, Jarek Nieplocha, Atanas Rountev, P. Sadayappan. ipps 2006: [doi]

An approach to locality-conscious load balancing and transparent memory hierarchy management with a global-address-space parallel programming modelSriram Krishnamoorthy, Ümit V. Çatalyürek, Jarek Nieplocha, P. Sadayappan. ipps 2006: [doi]

Memory efficient parallel matrix multiplication operation for irregular problemsManojkumar Krishnan, Jarek Nieplocha. cf 2006: 229-240 [doi]

M12 - Overview of the global arrays parallel software development toolkitJarek Nieplocha, Bruce Palmer, Manojkumar Krishnan, P. Sadayappan. sc 2006: 226 [doi]

Advances, Applications and Performance of the Global Arrays Shared Memory Programming ToolkitJarek Nieplocha, Bruce Palmer, Vinod Tipparaju, Manojkumar Krishnan, Harold Trease, Edoardo AprÃ . ijhpca, 20(2):203-231, 2006. [doi]

High Performance Remote Memory Access Communication: The Armci ApproachJarek Nieplocha, Vinod Tipparaju, Manojkumar Krishnan, Dhabaleswar K. Panda. ijhpca, 20(2):233-253, 2006. [doi]

ScalaBLAST: A Scalable Implementation of BLAST for High-Performance Data-Intensive Bioinformatics AnalysisChris Oehmen, Jarek Nieplocha. tpds, 17(8):740-749, 2006. [doi]

SFT: scalable fault toleranceFabrizio Petrini, Jarek Nieplocha, Vinod Tipparaju. sigops, 40(2):55-62, 2006. [doi]

A Performance Instrumentation Framework to Characterize Computation-Communication Overlap in Message-Passing SystemsAniruddha G. Shet, P. Sadayappan, David E. Bernholdt, Jarek Nieplocha, Vinod Tipparaju. cluster 2006: [doi]

2005

QsNetII: Defining High-Performance Network DesignJon Beecroft, David Addison, David Hewson, Moray McLaren, Duncan Roweth, Fabrizio Petrini, Jarek Nieplocha. micro, 25(4):34-47, 2005. [doi]

Data and Computation Abstractions for Dynamic and Irregular ComputationsSriram Krishnamoorthy, Jarek Nieplocha, P. Sadayappan. hipc 2005: 258-269 [doi]

Multilevel Parallelism in Computational Chemistry using Common Component Architecture and Global ArraysManojkumar Krishnan, Yuri Alexeev, Theresa L. Windus, Jarek Nieplocha. sc 2005: 23 [doi]

An Evaluation of Two Implementation Strategies for Optimizing One-Sided Atomic ReductionJarek Nieplocha, Vinod Tipparaju, Edoardo Aprà. ipps 2005: [doi]

Exploiting processor groups to extend scalability of the GA shared memory programming modelJarek Nieplocha, Manojkumar Krishnan, Bruce Palmer, Vinod Tipparaju, Yeliang Zhang. cf 2005: 262-272 [doi]

Symmetric Data Objects and Remote Memory Access Communication for Fortran-95 ApplicationsJarek Nieplocha, Doug Baxter, Vinod Tipparaju, Craig Edward Rasmussen, Robert W. Numrich. europar 2005: 720-729 [doi]

Optimizing All-to-All Collective Communication by Exploiting Concurrency in Modern NetworksVinod Tipparaju, Jarek Nieplocha. sc 2005: 46 [doi]

Parallelization of the NAS Conjugate Gradient Benchmark Using the Global Arrays Shared Memory Programming ModelYeliang Zhang, Vinod Tipparaju, Jarek Nieplocha, Salim Hariri. ipps 2005: [doi]

2004

Efficient Layout Transformation for Disk-Based Multidimensional ArraysSriram Krishnamoorthy, Gerald Baumgartner, Chi-Chung Lam, Jarek Nieplocha, P. Sadayappan. hipc 2004: 386-398 [doi]

SRUMMA: A Matrix Multiplication Algorithm Suitable for Clusters and Scalable Shared Memory SystemsManojkumar Krishnan, Jarek Nieplocha. ipps 2004: [doi]

Optimizing Parallel Multiplication Operation for Rectangular and Transposed MatricesManojkumar Krishnan, Jarek Nieplocha. icpads 2004: 257-266 [doi]

Processor-Group Aware Runtime Support for Shared- and Global-Address Space ModelsManojkumar Krishnan, Vinod Tipparaju, Bruce Palmer, Jarek Nieplocha. icppw 2004: 506-513 [doi]

Optimisation and performance evaluation of mechanisms for latency tolerance in remote memory access communication on clustersJarek Nieplocha, Vinod Tipparaju, Manojkumar Krishnan, Gopalakrishnan Santhanaraman, Dhabaleswar K. Panda. ijhpcn, 2(2/3/4):198-209, 2004. [doi]

Co-array Python: A Parallel Extension to the Python LanguageCraig Edward Rasmussen, Matthew J. Sottile, Jarek Nieplocha, Robert W. Numrich, Eric Jones. europar 2004: 632-637 [doi]

Toward Efficient Compilation of User-Defined Extensible Fortran DirectivesMatthew Rosing, Jarek Nieplocha, Steve Yabusaki. hips 2004: 61-69 [doi]

Toward Efficient Compilation of User-Defined Extensible Fortran DirectivesMatthew Rosing, Jarek Nieplocha, Steve Yabusaki. ipps 2004: 61-69 [doi]

Host-Assisted Zero-Copy Remote Memory Access Communication on InfiniBandVinod Tipparaju, Gopalakrishnan Santhanaraman, Jarek Nieplocha, Dhabaleswar K. Panda. ipps 2004: [doi]

2003

Optimizing Synchronization Operations for Remote Memory Communication SystemsDarius Buntinas, Amina Saify, Dhabaleswar K. Panda, Jarek Nieplocha. ipps 2003: 199 [doi]

Efficient Collective Operations Using Remote Memory Operations on VIA-Based ClustersRinku Gupta, Pavan Balaji, Dhabaleswar K. Panda, Jarek Nieplocha. ipps 2003: 46 [doi]

One-Sided Communication on Clusters with MyrinetJarek Nieplocha, Edoardo Aprà, Jialin Ju, Vinod Tipparaju. cluster, 6(2):115-124, 2003. [doi]

Optimizing Mechanisms for Latency Tolerance in Remote Memory Access Communication on ClustersJarek Nieplocha, Vinod Tipparaju, Manojkumar Krishnan, Gopalakrishnan Santhanaraman, Dhabaleswar K. Panda. cluster 2003: 138-147 [doi]

Shared Memory Mirroring for Reducing Communication Overhead on Commodity NetworksBruce Palmer, Jarek Nieplocha, Edoardo Aprà. cluster 2003: 420 [doi]

Exploiting Non-blocking Remote Memory Access Communication in Scientific BenchmarksVinod Tipparaju, Manojkumar Krishnan, Jarek Nieplocha, Gopalakrishnan Santhanaraman, Dhabaleswar K. Panda. hipc 2003: 248-258 [doi]

Fast Collective Operations Using Shared and Remote Memory Access Protocols on ClustersVinod Tipparaju, Jarek Nieplocha, Dhabaleswar K. Panda. ipps 2003: 84 [doi]

2002

Efficient Barrier Using Remote Memory Operations on VIA-Based ClustersRinku Gupta, Vinod Tipparaju, Jarek Nieplocha, Dhabaleswar K. Panda. cluster 2002: 83 [doi]

Protocols and Strategies for Optimizing Performance of Remote Memory Operations on ClustersJarek Nieplocha, Vinod Tipparaju, Amina Saify, Dhabaleswar K. Panda. ipps 2002: [doi]

Efficient Algorithms for Ghost Cell Updates on Two Classes of MPP ArchitecturesBruce Palmer, Jarek Nieplocha. pdcs 2002: 192-197

2001

Building an Application Domain Specific Programming Framework for Computational Fluid Dynamics Calculations on Parallel ComputersJarek Nieplocha, Harold Trease, Jialin Ju, D. Rector, Bruce Palmer. ppsc 2001:

One-sided Communication on the Myrinet-based SMP Clusters using the GM Message-Passing LibraryJarek Nieplocha, Jialin Ju, Edoardo Aprà. ipps 2001: 166

2000

A Multiprotocol Communication Support for the Global Address Space Programming Model on the IBM SPJarek Nieplocha, Jialin Ju, Tjerk P. Straatsma. europar 2000: 718-728 [doi]

Computational chemistry on Fujitsu vector-parallel processors: Hardware and programming environmentRoss H. Nobes, Alistair P. Rendell, Jarek Nieplocha. pc, 26(7-8):869-886, 2000.

1999

ARMCI: A Portable Remote Memory Copy Libray for Ditributed Array Libraries and Compiler Run-Time SystemsJarek Nieplocha, Bryan Carpenter. ipps 1999: 533-546

Implementing noncollective parallel I/O in cluster environments using Active Message communicationJarek Nieplocha, Holger Dachsel, Ian T. Foster. cluster, 2(4):271-279, 1999.

1998

Distant I/O: One-Sided Access to Secondary Storage on Remote ProcessorsJarek Nieplocha, Ian T. Foster, Holger Dachsel. hpdc 1998: 148-154 [doi]

Performance and Experience with LAPI - a New High-Performance Communication Library for the IBM RS/6000 SPGautam Shah, Jarek Nieplocha, Jamshed H. Mirza, Chulho Kim, Robert J. Harrison, Rama Govindaraju, Kevin J. Gildea, Paul DiNicola, Carl A. Bender. ipps 1998: 260-266 [doi]

1997

1996

1995

1994

Global arrays: a portable "shared-memory" programming model for distributed memory computersJarek Nieplocha, Robert J. Harrison, Richard J. Littlefield. sc 1994: 340-349 [doi]