Kimmen Sjölander - researchr alias

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2011

2010

SATCHMO-JS: a webserver for simultaneous protein multiple sequence alignment and phylogenetic tree constructionRaffi Hagopian, John R. Davidson, Ruchira S. Datta, Bushra Samad, Glen R. Jarvis, Kimmen Sjölander. nar, 38(Web-Server-Issue):29-34, 2010. [doi]

Active site prediction using evolutionary and structural informationSriram Sankararaman, Fei Sha, Jack F. Kirsch, Michael I. Jordan, Kimmen Sjölander. bioinformatics, 26(5):617-624, 2010. [doi]

2008

2007

Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysisJake Gunn Glanville, Dan Kirshner, Nandini Krishnamurthy, Kimmen Sjölander. nar, 35(Web-Server-Issue):27-32, 2007. [doi]

2005

Subfamily HMMS in Functional GenomicsDuncan Brown, Nandini Krishnamurthy, Joseph M. Dale, Wayne Christopher, Kimmen Sjölander. psb 2005: [doi]

2004

COACH: profile-profile alignment of protein families using hidden Markov modelsRobert C. Edgar, Kimmen Sjölander. bioinformatics, 20(8):1309-1318, 2004. [doi]

A comparison of scoring functions for protein sequence profile alignmentRobert C. Edgar, Kimmen Sjölander. bioinformatics, 20(8):1301-1308, 2004. [doi]

Phylogenomic inference of protein molecular function: advances and challengesKimmen Sjölander. bioinformatics, 20(2):170-179, 2004. [doi]

2003

Simultaneous Sequence Alignment and Tree Construction Using Hidden Markov ModelsRobert C. Edgar, Kimmen Sjölander. psb 2003: 180-191 [doi]

SATCHMO: Sequence Alignment and Tree Construction Using Hidden Markov ModelsRobert C. Edgar, Kimmen Sjölander. bioinformatics, 19(11):1404-1411, 2003.

1998

Phylogenetic Inference in Protein Superfamilies: Analysis of SH2 DomainsKimmen Sjölander. ismb 1998: 165-174

1996

Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homologyKimmen Sjölander, Kevin Karplus, Michael Brown, Richard Hughey, Anders Krogh, I. Saira Mian, David Haussler. bioinformatics, 12(4):327-345, 1996.

1994

Recent Methods for RNA Modeling Using Stochastic Context-Free GrammarsYasubumi Sakakibara, Michael Brown, Richard Hughey, I. Saira Mian, Kimmen Sjölander, Rebecca C. Underwood, David Haussler. cpm 1994: 289-306

1993

Using Dirichlet Mixture Priors to Derive Hidden Markov Models for Protein FamiliesMichael Brown, Richard Hughey, Anders Krogh, I. Saira Mian, Kimmen Sjölander, David Haussler. ismb 1993: 47-55