Leming M. Shi - researchr alias

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Viewing Publication 1 - 23 from 23

2011

Selecting a single model or combining multiple models for microarray-based classifier development? - A comparative analysis based on large and diverse datasets generated from the MAQC-II projectMinjun Chen, Leming M. Shi, Reagan Kelly, Roger Perkins, Hong Fang, Weida Tong. bmcbi, 12(S-10), 2011. [doi]

The MicroArray Quality Control (MAQC) Project and Cross-Platform Analysis of Microarray DataZhining Wen, Zhenqiang Su, Jie Liu, Baitang Ning, Lei Guo, Weida Tong, Leming M. Shi. In Henry Horng-Shing Lu, Bernhard Schölkopf, Hongyu Zhao, editors, Handbook of Statistical Bioinformatics. Springer Handbooks of Computational Statistics, pages 171-192, Springer, 2011. [doi]

2009

2008

Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samplesHuixiao Hong, Zhenqiang Su, Weigong Ge, Leming M. Shi, Roger Perkins, Hong Fang, Joshua Xu, James J. Chen, Tao Han, Jim Kaput, James C. Fuscoe, Weida Tong. bmcbi, 9(S-9), 2008. [doi]

Very Important Pool (VIP) genes - an application for microarray-based molecular signaturesZhenqiang Su, Huixiao Hong, Hong Fang, Leming M. Shi, Roger Perkins, Weida Tong. bmcbi, 9(S-9), 2008. [doi]

2006

Gene Expression Profiles Distinguish the Carcinogenic Effects of Aristolochic Acid in Target (Kidney) and Non-target (Liver) Tissues in RatsTao Chen, Lei Guo, Lu Zhang, Leming M. Shi, Hong Fang, Yongming Sun, James C. Fuscoe, Nan Mei. bmcbi, 7(S-2), 2006. [doi]

Differential gene expression in mouse primary hepatocytes exposed to the peroxisome proliferator-activated receptor alpha agonistsLei Guo, Hong Fang, Jim Collins, Xiao-hui Fan, Stacey L. Dial, Alex Wong, Kshama Mehta, Ernice Blann, Leming M. Shi, Weida Tong, Yvonne P. Dragan. bmcbi, 7(S-2), 2006. [doi]

Improvement in the Reproducibility and Accuracy of DNA Microarray Quantification by Optimizing Hybridization ConditionsTao Han, Cathy D. Melvin, Leming M. Shi, William S. Branham, Carrie L. Moland, P. Scott Pine, Karol L. Thompson, James C. Fuscoe. bmcbi, 7(S-2), 2006. [doi]

Analysis of gene expression changes in relation to toxicity and tumorigenesis in the livers of Big Blue transgenic rats fed comfrey (::::Symphytum officinale::::)Nan Mei, Lei Guo, Lu Zhang, Leming M. Shi, Yongming Andrew Sun, Chris Fung, Carrie L. Moland, Stacey L. Dial, James C. Fuscoe, Tao Chen. bmcbi, 7(S-2), 2006. [doi]

Integrating time-course microarray gene expression profiles with cytotoxicity for identification of biomarkers in primary rat hepatocytes exposed to cadmiumYongxi Tan, Leming M. Shi, Saber M. Hussain, Jun Xu, Weida Tong, John M. Frazier, Charles Wang. bioinformatics, 22(1):77-87, 2006. [doi]

2005

Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profilingHong Fang, Weida Tong, Roger Perkins, Leming M. Shi, Huixiao Hong, X. Cao, Qian Xie, S. H. Yim, J. M. Ward, Henry C. Pitot, Yvonne P. Dragan. bmcbi, 6(S-2), 2005. [doi]

Quality control and quality assessment of data from surface-enhanced laser desorption/ionization (SELDI) time-of flight (TOF) mass spectrometry (MS)Huixiao Hong, Yvonne P. Dragan, Joshua Epstein, Candee Teitel, Bangzheng Chen, Qian Xie, Hong Fang, Leming M. Shi, Roger Perkins, Weida Tong. bmcbi, 6(S-2), 2005. [doi]

A microarray study of MPP:::+:::-treated PC12 Cells: Mechanisms of toxicity (MOT) analysis using bioinformatics toolsZengjun Xu, Tucker A. Patterson, Jonathan D. Wren, Tao Han, Leming M. Shi, Helen Duhart, Syed F. Ali, William Slikker Jr.. bmcbi, 6(S-2), 2005. [doi]

2004

Eigenvalue Analysis of Peroxisome Proliferator-Activated Receptor gamma AgonistsChenzhong Liao, Aihua Xie, Leming M. Shi, Jiaju Zhou, Xianping Lu. jcisd, 44(1):230-238, 2004. [doi]

Multi-class tumor classification by discriminant partial least squares using microarray gene expression data and assessment of classification modelsYongxi Tan, Leming M. Shi, Weida Tong, G. T. Gene Hwang, Charles Wang. CANDC, 28(3):235-243, 2004. [doi]

2001

QSAR Models Using a Large Diverse Set of EstrogensLeming M. Shi, Hong Fang, Weida Tong, Jie Wu, Roger Perkins, Robert M. Blair, William S. Branham, Stacey L. Dial, Carrie L. Moland, Daniel M. Sheehan. jcisd, 41(1):186-195, 2001. [doi]

2000

Mining and Visualizing Large Anticancer Drug Discovery DatabasesLeming M. Shi, Yi Fan, Jae K. Lee, Mark Waltham, Darren T. Andrews, Uwe Scherf, Kenneth D. Paull, John N. Weinstein. jcisd, 40(2):367-379, 2000. [doi]

1998

Mining the NCI Anticancer Drug Discovery Databases: Genetic Function Approximation for the QSAR Study of Anticancer Ellipticine AnaloguesLeming M. Shi, Yi Fan, Timothy G. Myers, Patrick M. O Connor, Kenneth D. Paull, Stephen H. Friend, John N. Weinstein. jcisd, 38(2):189-199, 1998. [doi]

1997

Genetic function approximation in the molecular pharmacology of cancerLeming M. Shi, Yi Fan, Timothy G. Myers, John N. Weinstein. icnn 1997: 2490-2493 [doi]

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