Nancy M. Amato - researchr alias

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2011

2010

Proceedings of the 7th Conference on Computing Frontiers, 2010, Bertinoro, Italy, May 17-19, 2010Nancy M. Amato, Hubertus Franke, Paul H. J. Kelly, editors, ACM, 2010.

STAPL: standard template adaptive parallel libraryAntal A. Buss, Harshvardhan, Ioannis Papadopoulos, Olga Pearce, Timmie G. Smith, Gabriel Tanase, Nathan Thomas, Xiabing Xu, Mauro Bianco, Nancy M. Amato, Lawrence Rauchwerger. systor 2010: [doi]

The STAPL pViewAntal A. Buss, Adam Fidel, Harshvardhan, Timmie G. Smith, Gabriel Tanase, Nathan Thomas, Xiabing Xu, Mauro Bianco, Nancy M. Amato, Lawrence Rauchwerger. lcpc 2011: 261-275 [doi]

Multithreaded Asynchronous Graph Traversal for In-Memory and Semi-External MemoryRoger A. Pearce, Maya Gokhale, Nancy M. Amato. sc 2010: 1-11 [doi]

Toward Simulating Realistic Pursuit-Evasion Using a Roadmap-Based ApproachSamuel Rodríguez, Jory Denny, Takis Zourntos, Nancy M. Amato. mig 2010: 82-93 [doi]

Behavior-based evacuation planningSamuel Rodríguez, Nancy M. Amato. icra 2010: 350-355 [doi]

Reachable Distance Space: Efficient Sampling-Based Planning for Spatially Constrained SystemsXinyu Tang, Shawna L. Thomas, Phillip Coleman, Nancy M. Amato. ijrr, 29(7):916-934, 2010. [doi]

2009

2008

Algorithmic Foundation of Robotics VII, Selected Contributions of the Seventh International Workshop on the Algorithmic Foundations of Robotics, WAFR 2006, July 16-18, 2006, New York, NY, USASrinivas Akella, Nancy M. Amato, Wesley H. Huang, Bud Mishra, editors, Volume 47 of Springer Tracts in Advanced Robotics, Springer, 2008.

Special Issue on the Seventh International Workshop on Algorithmic Foundations of RoboticsSrinivas Akella, Nancy M. Amato, Wesley H. Huang, Bud Mishra. ijrr, 27(11-12):1173-1174, 2008.

PrefaceNancy M. Amato, Der-Tsai Lee, Andrea Pietracaprina, Roberto Tamassia. TCS, 408(2-3):97-98, 2008. [doi]

Design for Interoperability in stapl: pMatrices and Linear Algebra AlgorithmsAntal A. Buss, Timmie G. Smith, Gabriel Tanase, Nathan L. Thomas, Mauro Bianco, Nancy M. Amato, Lawrence Rauchwerger. lcpc 2008: 304-315 [doi]

Approximate convex decomposition of polyhedra and its applicationsJyh-Ming Lien, Nancy M. Amato. cagd, 25(7):503-522, 2008. [doi]

Planning with Reachable DistancesXinyu Tang, Shawna L. Thomas, Nancy M. Amato. wafr 2009: 517-531 [doi]

2007

Approximate convex decomposition of polyhedraJyh-Ming Lien, Nancy M. Amato. sma 2007: 121-131 [doi]

Analysis of the Evolution of C-Space Models built through Incremental ExplorationMarco Morales, Roger A. Pearce, Nancy M. Amato. icra 2007: 1029-1034 [doi]

A framework for planning motion in environments with moving obstaclesSamuel Rodríguez, Jyh-Ming Lien, Nancy M. Amato. iros 2007: 3309-3314 [doi]

Associative Parallel Containers in STAPLGabriel Tanase, Chidambareswaran Raman, Mauro Bianco, Nancy M. Amato, Lawrence Rauchwerger. lcpc 2008: 156-171 [doi]

Tools for Simulating and Analyzing RNA Folding KineticsXinyu Tang, Shawna L. Thomas, Lydia Tapia, Nancy M. Amato. recomb 2007: 268-282 [doi]

Planning with Reachable Distances: Fast Enforcement of Closure ConstraintsXinyu Tang, Shawna L. Thomas, Nancy M. Amato. icra 2007: 2694-2699 [doi]

Kinetics analysis methods for approximate folding landscapesLydia Tapia, Xinyu Tang, Shawna L. Thomas, Nancy M. Amato. ismb 2007: 539-548 [doi]

Biasing Samplers to Improve Motion Planning PerformanceShawna L. Thomas, Marco Morales, Xinyu Tang, Nancy M. Amato. icra 2007: 1625-1630 [doi]

Simulating Protein Motions with Rigidity AnalysisShawna L. Thomas, Xinyu Tang, Lydia Tapia, Nancy M. Amato. jcb, 14(6):839-855, 2007. [doi]

2006

Editorial: Special Section on High-Performance Computational BiologySrinivas Aluru, Nancy M. Amato, David A. Bader. tpds, 17(8):737-739, 2006. [doi]

Intelligent autonomous systems (IAS-8)Nancy M. Amato, Andrea Bonarini, Frans C. A. Groen, Eiichi Yoshida. ras, 54(2):95-96, 2006. [doi]

VIZMO++: a Visualization, Authoring, and Educational Tool for Motion PlanningAimée Vargas Estrada, Jyh-Ming Lien, Nancy M. Amato. icra 2006: 727-732

Simultaneous shape decomposition and skeletonizationJyh-Ming Lien, John Keyser, Nancy M. Amato. wm 2006: 219-228 [doi]

Approximate convex decomposition of polygonsJyh-Ming Lien, Nancy M. Amato. comgeo, 35(1-2):100-123, 2006. [doi]

Metrics for Analyzing the Evolution of C-space ModelsMarco Morales, Roger A. Pearce, Nancy M. Amato. icra 2006: 1268-1273

SmartApps: middle-ware for adaptive applications on reconfigurable platformsLawrence Rauchwerger, Nancy M. Amato. sigops, 40(2):73-82, 2006. [doi]

RESAMPL: A Region-Sensitive Adaptive Motion PlannerSamuel Rodríguez, Shawna L. Thomas, Roger A. Pearce, Nancy M. Amato. wafr 2008: 285-300 [doi]

An Obstacle-based Rapidly-exploring Random TreeSamuel Rodríguez, Xinyu Tang, Jyh-Ming Lien, Nancy M. Amato. icra 2006: 895-900

Planning Motion in Completely Deformable EnvironmentsSamuel Rodríguez, Jyh-Ming Lien, Nancy M. Amato. icra 2006: 2466-2471

Simulating Protein Motions with Rigidity AnalysisShawna L. Thomas, Xinyu Tang, Lydia Tapia, Nancy M. Amato. recomb 2006: 394-409 [doi]

Incremental Map Generation (IMG)Dawen Xie, Marco Morales, Roger A. Pearce, Shawna L. Thomas, Jyh-Ming Lien, Nancy M. Amato. wafr 2008: 53-68 [doi]

2005

Editorial: Special Issue on Robotics Techniques Applied to Computational BiologyGregory S. Chirikjian, Nancy M. Amato, Lydia E. Kavraki. ijrr, 24(2-3):107, 2005.

An Experimental Evaluation of the HP V-Class and SGI Origin 2000 Multiprocessors using Microbenchmarks and Scientific ApplicationsRavi R. Iyer, Jack Perdue, Lawrence Rauchwerger, Nancy M. Amato, Laxmi N. Bhuyan. ijpp, 33(4):307-350, 2005. [doi]

Shepherding Behaviors with Multiple ShepherdsJyh-Ming Lien, Samuel Rodríguez, Jean-Phillipe Malric, Nancy M. Amato. icra 2005: 3402-3407

C-space Subdivision and Integration in Feature-Sensitive Motion PlanningMarco Morales, Lydia Tapia, Roger A. Pearce, Samuel Rodríguez, Nancy M. Amato. icra 2005: 3114-3119

Using Motion Planning to Study RNA Folding KineticsXinyu Tang, Bonnie Kirkpatrick, Shawna L. Thomas, Guang Song, Nancy M. Amato. jcb, 12(6):862-881, 2005. [doi]

A framework for adaptive algorithm selection in STAPLNathan Thomas, Gabriel Tanase, Olga Tkachyshyn, Jack Perdue, Nancy M. Amato, Lawrence Rauchwerger. ppopp 2005: 277-288 [doi]

Parallel protein folding with STAPLShawna L. Thomas, Gabriel Tanase, Lucia K. Dale, Jose M. Moreira, Lawrence Rauchwerger, Nancy M. Amato. concurrency, 17(14):1643-1656, 2005. [doi]

Algorithms for Fast Concurrent Reconfiguration of Hexagonal Metamorphic RobotsJennifer E. Walter, Elizabeth M. Tsai, Nancy M. Amato. trob, 21(4):621-631, 2005. [doi]

2004

Swarming Behavior Using Probabilistic Roadmap TechniquesO. Burçhan Bayazit, Jyh-Ming Lien, Nancy M. Amato. sab 2005: 112-125 [doi]

Topic 13: Theory and Algorithms for Parallel ComputationChristos Kaklamanis, Nancy M. Amato, Danny Krizanc, Andrea Pietracaprina. europar 2004: 803 [doi]

Complexity Analysis and Approximate Solutions for Two Multiple-robot Localization ProblemsJinsuck Kim, Nancy M. Amato. icra 2004: 1052-1057 [doi]

Approximate convex decomposition of polygonsJyh-Ming Lien, Nancy M. Amato. compgeom 2004: 17-26 [doi]

Shepherding BehaviorsJyh-Ming Lien, O. Burçhan Bayazit, Ross T. Sowell, Samuel Rodríguez, Nancy M. Amato. icra 2004: 4159-4164 [doi]

Approximate convex decompositionJyh-Ming Lien, Nancy M. Amato. compgeom 2004: 457-458 [doi]

A generalized framework for interactive dynamic simulation for multirigid bodiesWookho Son, Kyunghwan Kim, Nancy M. Amato, Jeffrey C. Trinkle. tsmc, 34(2):912-924, 2004. [doi]

A motion-planning approach to folding: from paper craft to protein foldingGuang Song, Nancy M. Amato. trob, 20(1):60-71, 2004. [doi]

Using motion planning to study RNA folding kineticsXinyu Tang, Bonnie Kirkpatrick, Shawna L. Thomas, Guang Song, Nancy M. Amato. recomb 2004: 252-261 [doi]

Parallel Protein Folding with STAPLShawna L. Thomas, Nancy M. Amato. ipps 2004: [doi]

Enveloping Multi-pocket Obstacles with Hexagonal Metamorphic RobotsJennifer E. Walter, Mary E. Brooks, David F. Little, Nancy M. Amato. icra 2004: 2204-2209 [doi]

Distributed reconfiguration of metamorphic robot chainsJennifer E. Walter, Jennifer L. Welch, Nancy M. Amato. dc, 17(2):171-189, 2004. [doi]

A Kinematics-based Probabilistic Roadmap Method for High DOF Closed Chain SystemsDawen Xie, Nancy M. Amato. icra 2004: 473-478 [doi]

2003

Using Motion Planning to Map Protein Folding Landscapes and Analyze Folding Kinetics of Known Native StructuresNancy M. Amato, Ken A. Dill, Guang Song. jcb, 10(3/4):239-255, 2003. [doi]

Extracting optimal paths from roadmaps for motion planningJinsuck Kim, Roger A. Pearce, Nancy M. Amato. icra 2003: 2424-2429

Feature-based localization using scannable visibility sectorsJinsuck Kim, Roger A. Pearce, Nancy M. Amato. icra 2003: 2854-2859

A general framework for sampling on the medial axis of the free spaceJyh-Ming Lien, Shawna L. Thomas, Nancy M. Amato. icra 2003: 4439-4444

Neuron PRM: a framework for constructing cortical networksJyh-Ming Lien, Marco Morales, Nancy M. Amato. ijon, 52-54:191-197, 2003. [doi]

Improving the connectivity of PRM roadmaps[l]Marco Morales, Samuel Rodríguez, Nancy M. Amato. icra 2003: 4427-4432

A general framework for PRM motion planningGuang Song, Shawna L. Thomas, Nancy M. Amato. icra 2003: 4445-4450

A Path Planning-Based Study of Protein Folding with a Case Study of Hairpin Formation in Protein G and LGuang Song, Shawna L. Thomas, Ken A. Dill, J. Martin Scholtz, Nancy M. Amato. psb 2003: 240-251 [doi]

Enveloping obstacles with hexagonal metamorphic robotsJennifer E. Walter, Elizabeth M. Tsai, Nancy M. Amato. icra 2003: 741-748

2002

Using Motion Planning to Study Protein Folding PathwaysNancy M. Amato, Guang Song. jcb, 9(2):149-168, 2002.

Using motion planning to map protein folding landscapes and analyze folding kinetics of known native structuresNancy M. Amato, Ken A. Dill, Guang Song. recomb 2002: 2-11 [doi]

Probabilistic Roadmap Motion Planning for Deformable ObjectsO. Burçhan Bayazit, Jyh-Ming Lien, Nancy M. Amato. icra 2002: 2126-2135

Roadmap-Based Flocking for Complex EnvironmentsO. Burçhan Bayazit, Jyh-Ming Lien, Nancy M. Amato. fpga 2002: 104-115 [doi]

SmartApps: An Application Centric Approach to High Performance Computing: Compiler-Assisted Software and Hardware Support for Reduction OperationsFrancis H. Dang, María Jesús Garzarán, Milos Prvulovic, Ye Zhang, Alin Jula, Hao Yu, Nancy M. Amato, Lawrence Rauchwerger, Josep Torrellas. ipps 2002: [doi]

Choosing Good Paths for Fast Distributed Reconfiguration of Hexagonal Metamorphic RobotsJennifer E. Walter, Elizabeth M. Tsai, Nancy M. Amato. icra 2002: 102-109

Concurrent metamorphosis of hexagonal robot chains into simple connected configurationsJennifer E. Walter, Jennifer L. Welch, Nancy M. Amato. trob, 18(6):945-956, 2002. [doi]

2001

A Randomized Algorithm for Triangulating a Simple Polygon in Linear TimeNancy M. Amato, Michael T. Goodrich, Edgar A. Ramos. dcg, 26(2):245-265, 2001. [doi]

STAPL: An Adaptive, Generic Parallel C++ LibraryPing An, Alin Jula, Silvius Rus, Steven Saunders, Timmie G. Smith, Gabriel Tanase, Nathan Thomas, Nancy M. Amato, Lawrence Rauchwerger. lcpc 2003: 193-208 [doi]

Ligand Binding with OBPRM and User InputO. Burçhan Bayazit, Guang Song, Nancy M. Amato. icra 2001: 954-959

Enhancing Randomized Motion Planners: Exploring with Haptic HintsO. Burçhan Bayazit, Guang Song, Nancy M. Amato. arobots, 10(2):163-174, 2001.

Probabilistic Roadmaps - Putting It All TogetherLucia K. Dale, Nancy M. Amato. icra 2001: 1940-1947

An Integrated Mobile Robot Path (Re)Planner and Localizer for Personal RobotsJinsuck Kim, Nancy M. Amato, Sooyong Lee. icra 2001: 3789-3794

Hybrid Dynamic Simulation of Rigid-Body Contact with Coulomb FrictionWookho Son, Jeffrey C. Trinkle, Nancy M. Amato. icra 2001: 1376-1381

Customizing PRM Roadmaps at Query TimeGuang Song, Shawna Miller, Nancy M. Amato. icra 2001: 1500-1505

Using motion planning to study protein folding pathwaysGuang Song, Nancy M. Amato. recomb 2001: 287-296 [doi]

A Motion Planning Approach to Folding: From Paper Craft to Protein FoldingGuang Song, Nancy M. Amato. icra 2001: 948-953

Disassembly Sequencing Using a Motion Planning ApproachSujay Sundaram, Ian Remmler, Nancy M. Amato. icra 2001: 1475-1480

An Adaptive Framework for Single Shot Motion Planning: A Self-tuning System for Rigid and Articulated RobotsDaniel Vallejo, Ian Remmler, Nancy M. Amato. icra 2001: 21-26

2000

Linear-time triangulation of a simple polygon made easier via randomizationNancy M. Amato, Michael T. Goodrich, Edgar A. Ramos. compgeom 2000: 201-212 [doi]

Computing the arrangement of curve segments: divide-and-conquer algorithms via samplingNancy M. Amato, Michael T. Goodrich, Edgar A. Ramos. soda 2000: 705-706 [doi]

Choosing good distance metrics and local planners for probabilistic roadmap methodsNancy M. Amato, O. Burçhan Bayazit, Lucia K. Dale, Christopher Jones, Daniel Vallejo. trob, 16(4):442-447, 2000. [doi]

Predicting Performance on SMPs. A Case Study: The SGI Power ChallengeNancy M. Amato, Jack Perdue, Mark M. Mathis, Andrea Pietracaprina, Geppino Pucci. ipps 2000: 729 [doi]

Enhancing Randomized Motion Planners: Exploring with Haptic HintsO. Burçhan Bayazit, Guang Song, Nancy M. Amato. icra 2000: 529-536

Localization Based on Visibility Sectors using Range SensorsSooyong Lee, Nancy M. Amato, James Fellers. icra 2000: 3505-3511

A general performance model for parallel sweeps on orthogonal grids for particle transport calculationsMark M. Mathis, Nancy M. Amato, Marvin L. Adams. ics 2000: 255-263 [doi]

SmartApps: An Application Centric Approach to High Performance ComputingLawrence Rauchwerger, Nancy M. Amato, Josep Torrellas. lcpc 2001: 82-96 [doi]

An Interactive Generalized Motion Simulator (GMS) in an Object-Oriented FrameworkWookho Son, Kyunghwan Kim, Nancy M. Amato. ca 2000: 176 [doi]

Distributed reconfigurtion of metamorphic robot chainsJennifer E. Walter, Jennifer L. Welch, Nancy M. Amato. podc 2000: 171-180 [doi]

1999

Parallel Transport Computations by Spatial DecompositionMarvin L. Adams, Nancy M. Amato, Paul Nelson, Lawrence Rauchwerger. ppsc 1999:

MAPRM: A Probabilistic Roadmap Planner with Sampling on the Medial Axis of the Free SpaceSteven A. Wilmarth, Nancy M. Amato, Peter F. Stiller. icra 1999: 1024-1031

Motion Planning for a Rigid Body Using Random Networks on the Medial Axis of the Free SpaceSteven A. Wilmarth, Nancy M. Amato, Peter F. Stiller. compgeom 1999: 173-180 [doi]

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