Roland Eils - researchr alias

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2011

RIP: the regulatory interaction predictor - a machine learning-based approach for predicting target genes of transcription factorsTobias Bauer, Roland Eils, Rainer König. bioinformatics, 27(16):2239-2247, 2011. [doi]

Reconstructing the Stochastic Evolution Diagram of Dynamic Complex SystemsNavid Bazzazzadeh, Benedikt Brors, Roland Eils. AAAI 2011: [doi]

Tracking multiple particles in fluorescence microscopy images via probabilistic data associationWilliam J. Godinez, Marko Lampe, Roland Eils, Barbara Müller, Karl Rohr. isbi 2011: 1925-1928 [doi]

3D segmentation and quantification of mouse embryonic stem cells in fluorescence microscopy imagesNathalie Harder, Megan Bodnar, Roland Eils, David L. Spector, Karl Rohr. isbi 2011: 216-219 [doi]

3D Segmentation and Quantification of Mouse Embryonic Stem Cells in Fluorescence Microscopy ImagesNathalie Harder, Megan Bodnar, Roland Eils, David L. Spector, Karl Rohr. bildmed 2011: 34-38 [doi]

Nonrigid Registration of 2-D and 3-D Dynamic Cell Nuclei Images for Improved Classification of Subcellular Particle MotionIl-Han Kim, Yi-Chun Chen, David L. Spector, Roland Eils, Karl Rohr. TIP, 20(4):1011-1022, 2011. [doi]

Quantification of frap experiments in live cell image sequences by combining segmentation and registrationIl-Han Kim, Catharina Cadmus, Andrea C. Pfeifer, Ursula Klingmüller, Roland Eils, Karl Rohr. isbi 2011: 212-215 [doi]

2010

2009

Prediction of small molecule binding property of protein domains with Bayesian classifiers based on Markov chainsAlla Bulashevska, Martin Stein, David Jackson, Roland Eils. CANDC, 33(6):457-460, 2009. [doi]

Identifying Fusion Events in Fluorescence Microscopy ImagesWilliam J. Godinez, Marko Lampe, Stefan Wörz, Roland Eils, Barbara Müller, Karl Rohr. isbi 2009: 1167-1170 [doi]

Evaluation of Approaches for Tracking Virus Particles in Fluorescence Microscopy ImagesWilliam J. Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr. bildmed 2009: 207-211 [doi]

Deterministic and probabilistic approaches for tracking virus particles in time-lapse fluorescence microscopy image sequencesWilliam J. Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr. mia, 13(2):325-342, 2009. [doi]

RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screensNora Rieber, Bettina Knapp, Roland Eils, Lars Kaderali. bioinformatics, 25(5):678-679, 2009. [doi]

2008

Probabilistic Tracking of Virus Particles in Fluorescence Microscopy Image SequencesWilliam J. Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr. bildmed 2008: 448-452 [doi]

Probabilistic tracking of virus particles in fluorescence microscopy imagesWilliam J. Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr. isbi 2008: 272-275 [doi]

Systems Biology and Artificial Life: Towards Predictive Modeling of Biological SystemsJan T. Kim, Roland Eils. alife, 14(1):1-2, 2008. [doi]

Automated Analysis of siRNA Screens of Virus Infected Cells Based on Immunofluorescence MicroscopyPetr Matula, Anil Kumar, Ilka Wörz, Nathalie Harder, Holger Erfle, Ralf Bartenschlager, Roland Eils, Karl Rohr. bildmed 2008: 453-457 [doi]

Nonrigid Registration of 3-D Multichannel Microscopy Images of Cell NucleiSiwei Yang, Daniela Köhler, Kathrin Teller, Thomas Cremer, Patricia Le Baccon, Edith Heard, Roland Eils, Karl Rohr. TIP, 17(4):493-499, 2008. [doi]

2007

On Validation of Non-physical Techniques for Elastic Image RegistrationEvgeny Gladilin, Karl Rohr, Roland Eils. bildmed 2007: 111-115 [doi]

Stochastical Analysis of Finite Point Sampling of 3D Chromatin Fiber in Interphase Cell NucleiEvgeny Gladilin, Sandra Götze, Jose Mateos-Langerak, Roel van Driel, Karl Rohr, Roland Eils. bird 2007: 104-118 [doi]

Geometrical probability approach for analysis of 3D chromatin structure in interphase cell nucleiEvgeny Gladilin, Sandra Götze, Jose Mateos-Langerak, Roel van Driel, Karl Rohr, Roland Eils. cibcb 2007: 127-134 [doi]

Tracking of Virus Particles in Time-Lapse Fluorescence Microscopy Image SequencesWilliam J. Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr. isbi 2007: 256-259 [doi]

Tracking of Virus Particles in Time-Lapse Fluorescence Microscopy Image SequencesWilliam J. Godinez, Marko Lampe, Stefan Wörz, Barbara Müller, Roland Eils, Karl Rohr. bildmed 2007: 6-10 [doi]

Determination of Mitotic Delays in 3d Fluorescence Microscopy Images of Human Cells Using an Error-Correcting Finite State MachineNathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Jan Ellenberg, Roland Eils, Karl Rohr. isbi 2007: 1044-1047 [doi]

Determination of Mitotic Delays in 3D Fluorescence Microscopy Images of Human Cells Using an Error-Correcting Finite State MachineNathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Jan Ellenberg, Roland Eils, Karl Rohr. bildmed 2007: 242-246 [doi]

Non-Rigid Temporal Registration of 2d and 3d Multi-Channel Microscopy Image Sequences of Human CellsIl-Han Kim, Siwei Yang, Patricia Le Baccon, Edith Heard, Yi-Chun Chen, David Spector, Constantin Kappel, Roland Eils, Karl Rohr. isbi 2007: 1328-1331 [doi]

Non-rigid Temporal Alignment of 2D and 3D Multi-channel Microscopy Image Sequences of Human CellsIl-Han Kim, Siwei Yang, Patricia Le Baccon, Edith Heard, Constantin Kappel, Roland Eils, Karl Rohr. bildmed 2007: 16-20 [doi]

Integrating Genomic and Transcriptomic Data into Graph Based Approaches for Defining Essential Reactions in the Metabolic Network of Escherichia ColiKitiporn Plaimas, Marcus Oswald, Roland Eils, Rainer König. lwa 2007: 55-60

Using gene expression data and network topology to detect substantial pathways, clusters and switches during oxygen deprivation of ::::Escherichia coli::::Gunnar Schramm, Marc Zapatka, Roland Eils, Rainer König. bmcbi, 8, 2007. [doi]

Analyzing the Variability of the 3D Structure of Chromatin Fiber Using Statistical Shape TheorySiwei Yang, Sandra Götze, Julio Mateos-Langerak, Roel van Driel, Roland Eils, Karl Rohr. dagm 2007: 497-506 [doi]

Variability Analysis of the Large-Scale Structure of Interphase Chromatin Fiber Based on Statistical Shape TheorySiwei Yang, Sandra Götze, Julio Mateos-Langerak, Roel van Driel, Roland Eils, Karl Rohr. massdata 2007: 37-46 [doi]

2006

Predicting protein subcellular locations using hierarchical ensemble of Bayesian classifiers based on Markov chainsAlla Bulashevska, Roland Eils. bmcbi, 7:298, 2006. [doi]

Systems Biology and Information Technology (Systembiologie und InformationstechnologieRoland Eils, Leo Neumann. it, 48(3):131-132, 2006. [doi]

3D Formnormalisierung von Zellkernen mit Hilfe einer elastischen KugelabbildungEvgeny Gladilin, Roland Eils, Karl Rohr. bildmed 2006: 384-388 [doi]

Automated recognition of mitotic patterns in fluorescence microscopy images of human cellsNathalie Harder, Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Jan Ellenberg, Roland Eils, Karl Rohr. isbi 2006: 1016-1019 [doi]

Automated Analysis of the Mitotic Phases of Human Cells in 3D Fluorescence Microscopy Image SequencesNathalie Harder, Felipe Mora-Bermúdez, William J. Godinez, Jan Ellenberg, Roland Eils, Karl Rohr. miccai 2006: 840-848 [doi]

Automated Analysis of Mitotic Phenotypes in Fluorescence Microscopy Images of Human CellsNathalie Harder, Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Jan Ellenberg, Roland Eils, Karl Rohr. bildmed 2006: 374-378 [doi]

Feature Selection for Evaluating Fluorescence Microscopy Images in Genome-Wide Cell ScreensVassili Kovalev, Nathalie Harder, Beate Neumann, Michael Held, Urban Liebel, Holger Erfle, Jan Ellenberg, Roland Eils, Karl Rohr. cvpr 2006: 276-283 [doi]

Discovering functional gene expression patterns in the metabolic network of ::::Escherichia coli ::::with wavelets transformsRainer König, Gunnar Schramm, Marcus Oswald, Hanna Seitz, Sebastian Sager, Marc Zapatka, Gerhard Reinelt, Roland Eils. bmcbi, 7:119, 2006. [doi]

Group testing for pathway analysis improves comparability of different microarray datasetsTheodora Manoli, Norbert Gretz, Hermann-Josef Gröne, Marc Kenzelmann, Roland Eils, Benedikt Brors. bioinformatics, 22(20):2500-2506, 2006. [doi]

Analyzing motion and deformation of the cell nucleus for studying co-localizations of nuclear structuresJulian Mattes, Janna Nawroth, Petra Boukamp, Roland Eils, Karin M. Greulich-Bode. isbi 2006: 1044-1047 [doi]

Pattern recognition of gene expression data on biochemical networks with simple wavelet transformsGunnar Schramm, Marcus Oswald, Hanna Seitz, Sebastian Sager, Marc Zapatka, Gerhard Reinelt, Roland Eils, Rainer König. lwa 2006: 350-355 [doi]

Argonaute - a database for gene regulation by mammalian microRNAsPriyanka Shahi, Serguei Loukianiouk, Andreas Bohne-Lang, Marc Kenzelmann, Stefan Küffer, Sabine Maertens, Roland Eils, Hermann-Josef Gröne, Norbert Gretz, Benedikt Brors. nar, 34(Database-Issue):115-118, 2006. [doi]

Tropical - parameter estimation and simulation of reaction-diffusion models based on spatio-temporal microscopy imagesMarkus Ulrich, Constantin Kappel, Joël Beaudouin, Stefan Hezel, Jochen Ulrich, Roland Eils. bioinformatics, 22(21):2709-2710, 2006. [doi]

Computational Systems Biology Platforms (Computergestützte Systembiologieplattformen)Ivayla Vacheva, Roland Eils. it, 48(3):140-147, 2006. [doi]

GOPET: A tool for automated predictions of Gene Ontology termsArunachalam Vinayagam, Coral del Val, Falk Schubert, Roland Eils, Karl-Heinz Glatting, Sándor Suhai, Rainer König. bmcbi, 7:161, 2006. [doi]

Non-rigid Registration of 3D Microscopy Images for the Normalization of Different Cell NucleiSiwei Yang, Daniela Köhler, Kathrin Teller, Thomas Cremer, Roland Eils, Karl Rohr. bildmed 2006: 364-368 [doi]

Non-rigid Registration of 3D Multi-channel Microscopy Images of Cell NucleiSiwei Yang, Daniela Köhler, Kathrin Teller, Thomas Cremer, Patricia Le Baccon, Edith Heard, Roland Eils, Karl Rohr. miccai 2006: 907-914 [doi]

2005

Inferring genetic regulatory logic from expression dataSvetlana Bulashevska, Roland Eils. bioinformatics, 21(11):2706-2713, 2005. [doi]

CGH-Profiler: Data mining based on genomic aberration profilesFalk Schubert, Bernhard Tausch, Stefan Joos, Roland Eils. bmcbi, 6:188, 2005. [doi]

Cross-platform analysis of cancer microarray data improves gene expression based classification of phenotypesPatrick Warnat, Roland Eils, Benedikt Brors. bmcbi, 6:265, 2005. [doi]

2004

General Stochastic Hybrid Method for the Simulation of Chemical Reaction Processes in CellsMartin Bentele, Roland Eils. cmsb 2005: 248-251 [doi]

Assessing The Similarity of Spatial Configurations Using Distance Differences and Bending Energy: Application To Chromosomal Interphase Arrangements In HeLa Cell ClonesJuntao Gao, Roland Eils, Daniela Köhler, Irina Solovei, Thomas Cremer, Julian Mattes. isbi 2004: 1400-1403

Gene expression analysis on biochemical networks using the Potts spin modelRainer König, Roland Eils. bioinformatics, 20(10):1500-1505, 2004. [doi]

Applying Support Vector Machines for Gene ontology based gene function predictionArunachalam Vinayagam, Rainer König, Jutta Moormann, Falk Schubert, Roland Eils, Karl-Heinz Glatting, Sándor Suhai. bmcbi, 5:116, 2004. [doi]

Spatial Modeling and Simulation of Diffusion in Nuclei of Living CellsDietmar Volz, Martin Eigel, Chaitanya Athale, Peter Bastian, Harald Hermann, Constantin Kappel, Roland Eils. cmsb 2005: 161-171 [doi]

2003

Gene expression analysis on biochemical networks with the potts spin modelRainer König, Roland Eils. gcb 2003: 69-72

Understanding the classification of tumors with a support-vector-machine: A case-based explanation schemeFalk Schubert, Jasmin Müller, Björn Fritz, Peter Lichter, Roland Eils. gcb 2003: 123-127

2002

Machine Learning Approaches for Deciphering Complex Pathomechanisms in CancerRoland Eils. gi 2002: 63-64

Modelling of Information Flows in CellsMarco Weismueller, Rainer König, Roland Eils. scesm 2002: 413-417

2001

1996

Modellgestützte Segmentierung von Replikationsdomänen in dreidimensionalen konfokalen MikroskopiebildernHarald Bornfleth, Daniele Zink, Kurt Sätzler, Roland Eils, Christoph Cremer. dagm 1996: 408-419

3D-Bildfolgen zur Auflösungsverbesserung in der FluoreszenzmikroskopieKurt Sätzler, Cornelius Cremer, Roland Eils. dagm 1996: 92-105