Ryan R. Brinkman - researchr alias

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Viewing Publication 1 - 24 from 24

2015

2014

Enhanced flowType/RchyOptimyx: a Bioconductor pipeline for discovery in high-dimensional cytometry dataKieran O'Neill, Adrin Jalali, Nima Aghaeepour, Holger Hoos, Ryan R. Brinkman. bioinformatics, 30(9):1329-1330, 2014. [doi]

2013

2012

Early immunologic correlates of HIV protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assaysNima Aghaeepour, Pratip K. Chattopadhyay, Anuradha Ganesan, Kieran O'Neill, Habil Zare, Adrin Jalali, Holger H. Hoos, Mario Roederer, Ryan R. Brinkman. bioinformatics, 28(7):1009-1016, 2012. [doi]

Adverse events following immunization: reporting standardization, automatic case classification and signal detectionMélanie Courtot, Ryan R. Brinkman, Alan Ruttenberg. icbo 2012: [doi]

2011

Building the OBO Foundry - One Policy at a TimeMélanie Courtot, Chris Mungall, Ryan R. Brinkman, Alan Ruttenberg. icbo 2012: [doi]

Towards an Adverse Event Reporting OntologyMélanie Courtot, Ryan R. Brinkman. icbo 2012: [doi]

Reporting Adverse Events: Basis for a Common RepresentationMélanie Courtot, Ryan R. Brinkman, Alan Ruttenberg. icbo 2012: [doi]

MIREOT: The minimum information to reference an external ontology termMélanie Courtot, Frank Gibson, Allyson L. Lister, James Malone, Daniel Schober, Ryan R. Brinkman, Alan Ruttenberg. ao, 6(1):23-33, 2011. [doi]

Overcoming the ontology enrichment bottleneck with Quick Term TemplatesPhilippe Rocca-Serra, Alan Ruttenberg, Martin J. O Connor, Patricia L. Whetzel, Daniel Schober, Jay Greenbaum, Mélanie Courtot, Ryan R. Brinkman, Susanna-Assunta Sansone, Richard H. Scheuermann, Bjoern Peters. ao, 6(1):13-22, 2011. [doi]

2010

2009

A Survey of Flow Cytometry Data Analysis MethodsAli Bashashati, Ryan R. Brinkman. abi, 2009, 2009. [doi]

Merging Mixture Components for Cell Population Identification in Flow CytometryGreg Finak, Ali Bashashati, Ryan R. Brinkman, Raphael Gottardo. abi, 2009, 2009. [doi]

Recent Bioinformatics Advances in the Analysis of High Throughput Flow Cytometry DataRaphael Gottardo, Ryan R. Brinkman, George Luta, Matthew P. Wand. abi, 2009, 2009. [doi]

flowCore: a Bioconductor package for high throughput flow cytometryFlorian Hahne, Nolwenn LeMeur, Ryan R. Brinkman, Byron Ellis, Perry Haaland, Deepayan Sarkar, Josef Spidlen, Errol Strain, Robert Gentleman. bmcbi, 10, 2009. [doi]

flowClust: a Bioconductor package for automated gating of flow cytometry dataKenneth Lo, Florian Hahne, Ryan R. Brinkman, Raphael Gottardo. bmcbi, 10, 2009. [doi]

FuGEFlow: data model and markup language for flow cytometryYu Qian, Olga Tchuvatkina, Josef Spidlen, Peter Wilkinson, Maura Gasparetto, Andrew R. Jones, Frank J. Manion, Richard H. Scheuermann, Rafick-Pierre Sekaly, Ryan R. Brinkman. bmcbi, 10, 2009. [doi]

Analysis of High-Throughput Flow Cytometry Data Using plateCoreErrol Strain, Florian Hahne, Ryan R. Brinkman, Perry Haaland. abi, 2009, 2009. [doi]

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