Simon Kasif - researchr alias

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Viewing Publication 1 - 64 from 64

2016

COMBREX-DB: an experiment centered database of protein function: knowledge, predictions and knowledge gapsYi-Chien Chang, Zhenjun Hu, John Rachlin, Brian P. Anton, Simon Kasif, Richard J. Roberts, Martin Steffen. nar, 44(Database-Issue):330-335, 2016. [doi]

2011

2010

Predicting malaria interactome classifications from time-course transcriptomic data along the intraerythrocytic developmental cycleAntonina Mitrofanova, Samantha Kleinberg, Jane Carlton, Simon Kasif, Bud Mishra. artmed, 49(3):167-176, 2010. [doi]

2009

Seeing the forest for the trees: using the Gene Ontology to restructure hierarchical clusteringDikla Dotan-Cohen, Simon Kasif, Avraham A. Melkman. bioinformatics, 25(14):1789-1795, 2009. [doi]

Integration of heterogeneous expression data sets extends the role of the retinol pathway in diabetes and insulin resistancePeter J. Park, Sek Won Kong, Toma Tebaldi, Weil R. Lai, Simon Kasif, Isaac S. Kohane. bioinformatics, 25(23):3121-3127, 2009. [doi]

2008

2007

Hierarchical tree snipping: clustering guided by prior knowledgeDikla Dotan-Cohen, Avraham A. Melkman, Simon Kasif. bioinformatics, 23(24):3335-3342, 2007. [doi]

2006

Multi-Node Graphs: A Framework for Multiplexed Biological AssaysNoga Alon, Vera Asodi, Charles Cantor, Simon Kasif, John Rachlin. jcb, 13(10):1659-1672, 2006. [doi]

2005

MuPlex: multi-objective multiplex PCR assay designJohn Rachlin, Chunming Ding, Charles Cantor, Simon Kasif. nar, 33(Web-Server-Issue):544-547, 2005. [doi]

Less is more: towards an optimal universal description of protein foldsJoseph D. Szustakowski, Simon Kasif, Zhiping Weng. eccb 2005: 71 [doi]

GEMS: a web server for biclustering analysis of expression dataChang-Jiun Wu, Simon Kasif. nar, 33(Web-Server-Issue):596-599, 2005. [doi]

Phylogenetic detection of conserved gene clusters in microbial genomesYu Zheng, Brian P. Anton, Richard J. Roberts, Simon Kasif. bmcbi, 6:243, 2005. [doi]

2004

Learning a Hidden MatchingNoga Alon, Richard Beigel, Simon Kasif, Steven Rudich, Benny Sudakov. SICOMP, 33(2):487-501, 2004. [doi]

topoSNP: a topographic database of non-synonymous single nucleotide polymorphisms with and without known disease associationNathan O. Stitziel, T. Andrew Binkowski, Yan Yuan Tseng, Simon Kasif, Jie Liang. nar, 32(Database-Issue):520-522, 2004.

2003

2002

Learning a Hidden MatchingNoga Alon, Richard Beigel, Simon Kasif, Steven Rudich, Benny Sudakov. focs 2002: 197 [doi]

A Bayesian framework for combining gene predictionsVladimir Pavlovic, Ashutosh Garg, Simon Kasif. bioinformatics, 18(1):19-27, 2002.

2001

An optimal procedure for gap closing in whole genome shotgun sequencingRichard Beigel, Noga Alon, Simon Kasif, Mehmet Serkan Apaydin, Lance Fortnow. recomb 2001: 22-30 [doi]

2000

Modeling splice sites with Bayes networksDeyou Cai, Arthur L. Delcher, Ben Kao, Simon Kasif. bioinformatics, 16(2):152-158, 2000.

1998

A Probabilistic Framework for Memory-Based ReasoningSimon Kasif, Steven Salzberg, David L. Waltz, John Rachlin, David W. Aha. ai, 104(1-2):287-311, 1998. [doi]

1997

Towards a Constraint-Based Engineering Framework for Algorithm Design and ApplicationSimon Kasif. constraints, 2(1):75-82, 1997.

1996

1995

1994

1993

Probabilistic Prediction of Protein Secondary Structure Using Causal Networks (Extended Abstract)Arthur L. Delcher, Simon Kasif, Harry R. Goldberg, William H. Hsu. AAAI 1993: 316-321

Protein Secondary-Structure Modeling with Probabilistic NetworksArthur L. Delcher, Simon Kasif, Harry R. Goldberg, William H. Hsu. ismb 1993: 109-117

Induction of Oblique Decision TreesDavid G. Heath, Simon Kasif, Steven Salzberg. IJCAI 1993: 1002-1007

The Complexity of Finding Minimal Voronoi Covers with Applications to Machine LearningDavid G. Heath, Simon Kasif. comgeo, 3:289-305, 1993.

Some Results on the Computational Complexity of Symmetric Connectionist NetworksSimon Kasif, Saibal Banerjee, Arthur L. Delcher, Gregory F. Sullivan. AMAI, 9(3-4):327-344, 1993.

Local Consistency in Parallel Constraint-Satisfaction NetworksSimon Kasif, Arthur L. Delcher. ppcp 1993: 139-145

OC1: A Randomized Induction of Oblique Decision TreesSreerama K. Murthy, Simon Kasif, Steven Salzberg, Richard Beigel. AAAI 1993: 322-327

1992

Improved Decision-Making in Game Trees: Recovering from PathologyArthur L. Delcher, Simon Kasif. AAAI 1992: 513-518

Efficient Parallel Term Matching and Anti-UnificationArthur L. Delcher, Simon Kasif. JAR, 9(3):391-406, 1992.

1991

Learning Nested Concept Classes with Limited StorageDavid G. Heath, Simon Kasif, S. Rao Kosaraju, Steven Salzberg, Gregory F. Sullivan. IJCAI 1991: 777-782

Learning with a Helpful TeacherSteven Salzberg, Arthur L. Delcher, David G. Heath, Simon Kasif. IJCAI 1991: 705-711

1990

Efficient Parallel Term Matching and Anti-UnificationArthur L. Delcher, Simon Kasif. ICLP 1990: 355-369

On the Parallel Complexity of Discrete Relaxation in Constraint Satisfaction NetworksSimon Kasif. ai, 45(3):275-286, 1990.

1989

Some Results on the Complexity of Exploiting Data Dependency in Parallel Logic ProgramsArthur L. Delcher, Simon Kasif. jlp, 6(3):229-241, 1989.

Parallel Solutions to Constraint Satisfaction ProblemsSimon Kasif. kr 1989: 180-188

1986

On the Parallel Complexity of Some Constraint Satisfaction ProblemsSimon Kasif. AAAI 1986: 349-353

Control and data driven execution of logic programs: A comparisonSimon Kasif. ijpp, 15(1):73-99, 1986. [doi]

1985

The Intelligent Channel: A Scheme for Result Sharing in Logic ProgramsSimon Kasif, Jack Minker. IJCAI 1985: 29-31

1983

1982

Logic Programming on ZMOB: A Highly Parallel MachineUpen S. Chakravarthy, Simon Kasif, Madhur Kohli, Jack Minker, D. Cao. icpp 1982: 347-349

Logic Programming: A Parallel ApproachNorbert Eisinger, Simon Kasif, Jack Minker. ICLP 1982: 71-77

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