Yi Pan - researchr alias

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2011

Robust inference for sparse cluster-correlated count dataJohn J. Hanfelt, Ruosha Li, Yi Pan, Pierre Payment. ma, 102(1):182-192, 2011. [doi]

A Genetic Algorithm for Constructing a Reliable MCDS in Probabilistic Wireless NetworksJing He, Zhipeng Cai, Shouling Ji, Raheem A. Beyah, Yi Pan. wasa 2011: 96-107 [doi]

Understandable learning machine system design for Transmembrane or Embedded Membrane segments predictionHae-Jin Hu, Robert W. Harrison, Phang C. Tai, Yi Pan. ijdmb, 5(1):38-51, 2011. [doi]

Sparse nonnegative matrix factorization for protein sequence motif discoveryWooYoung Kim, Bernard Chen, Jingu Kim, Yi Pan, Haesun Park. eswa, 38(10):13198-13207, 2011. [doi]

A local average connectivity-based method for identifying essential proteins from the network levelMin Li, Jianxin Wang, Xiang Chen, Huan Wang, Yi Pan. CANDC, 35(3):143-150, 2011. [doi]

ODORactor: a web server for deciphering olfactory codingXinyi Liu, Xubo Su, Fei Wang, Zhimin Huang, Qi Wang, Zhen Li, Ruina Zhang, Lifang Wu, Yi Pan, Yingyi Chen, Hanyi Zhuang, Guoqiang Chen, Ting Shi, Jian Zhang. bioinformatics, 27(16):2302-2303, 2011. [doi]

Multiple sequence alignment based on dynamic weighted guidance treeKen D. Nguyen, Yi Pan. ijbra, 7(2):168-182, 2011. [doi]

A comparison of the functional modules identified from time course and static PPI network dataXiwei Tang, Jianxin Wang, Binbin Liu, Min Li, Gang Chen, Yi Pan. bmcbi, 12:339, 2011. [doi]

A Fast Hierarchical Clustering Algorithm for Functional Modules Discovery in Protein Interaction NetworksJianxin Wang, Min Li, Jianer Chen, Yi Pan. tcbb, 8(3):607-620, 2011. [doi]

A study of the routing and spectrum allocation in spectrum-sliced Elastic Optical Path networksYang Wang, Xiaojun Cao, Yi Pan. infocom 2011: 1503-1511 [doi]

A New Method for Identifying Essential Proteins Based on Edge Clustering CoefficientHuan Wang, Min Li, Jianxin Wang, Yi Pan. isbra 2011: 87-98 [doi]

Security analysis and improvements of IEEE standard 802.16 in next generation wireless metropolitan access networkNaixue Xiong, Fan Yang, Hongyan Li, Jong Hyuk Park, Yuan-Shun Dai, Yi Pan. wicomm, 11(2):163-175, 2011. [doi]

2010

Using Hybrid Hierarchical K-means (HHK) clustering algorithm for protein sequence motif Super-Rule-Tree (SRT) structure constructionBernard Chen, Jieyue He, Stephen Pellicer, Yi Pan. ijdmb, 4(3):316-330, 2010. [doi]

Message from the PDSEC-10 workshop chairsRaphaël Couturier, Yi Pan, Enrique S. Quintana-Ortí, Thomas Rauber, Gudula Rünger, Laurence Tianruo Yang. ipps 2010: 1-2 [doi]

Exploring relations among college students prior knowledge, implicit theories of intelligence, and self-regulated learning in a hypermedia environmentJeffrey Alan Greene, Lara-Jeane Costa, Jane Robertson, Yi Pan, Victor M. Deekens. ce, 55(3):1027-1043, 2010. [doi]

A Reliable Energy Efficient Algorithm for Target Coverage in Wireless Sensor NetworksJing He, Naixue Xiong, Yang Xiao, Yi Pan. icdcsw 2010: 180-188 [doi]

A Novel Anti-collision Algorithm in RFID Systems for Identifying Passive TagsShi-Jinn Horng, Yuan-Hsin Chen, Ray-Shine Run, Jui-Lin Lai, Rong-Jian Chen, Wei-Chih Chen, Yi Pan, Takao Terano. tii, 6(1):105-121, 2010. [doi]

PrefaceZhiyi Huang, John Hine, Laurent Lefèvre, Tony McGregor, Yi Pan, Hong Shen, Zhiwei Xu. tjs, 51(3):241-243, 2010. [doi]

Essential Proteins Discovery from Weighted Protein Interaction NetworksMin Li, Jianxin Wang, Huan Wang, Yi Pan. isbra 2010: 89-100 [doi]

Delay-Bounded and Energy-Efficient Composite Event Monitoring in Heterogeneous Wireless Sensor NetworksYingshu Li, Chunyu Ai, Chinh T. Vu, Yi Pan, Raheem A. Beyah. tpds, 21(9):1373-1385, 2010. [doi]

Guest Editors Introduction to the Special Section on Bioinformatics Research and ApplicationsIon Mandou, Giri Narasimhan, Yi Pan, Yanqing Zhang. tcbb, 7(4):577-578, 2010. [doi]

Estimation of coefficients of individual agreement (CIAs) for quantitative and binary data using SAS and RYi Pan, Jingjing Gao, Michael Haber, Huiman X. Barnhart. cmpb, 98(2):214-219, 2010. [doi]

Optimal Allocation of Coupling about Water and Land Resources in the Process of UrbanizationYi Pan, Jiancang Xie, Xiaowei Si, Miao Jin. icee 2010: 4244-4247 [doi]

A SVM Based Relevance Feedback Algorithm for 3D Model RetrievalYi Pan, Mingquan Zhou, Yachun Fan, Shaode Yu. apwcs 2010: 139-142 [doi]

Distributed Explicit Rate Schemes in Multi-Input-Multi-Output Network SystemsNaixue Xiong, Athanasios V. Vasilakos, Laurence Tianruo Yang, Yi Pan, Cheng-Xiang Wang, Art Vandenberg. tsmc, 40(4):448-459, 2010. [doi]

A novel self-tuning feedback controller for active queue management supporting TCP flowsNaixue Xiong, Athanasios V. Vasilakos, Laurence Tianruo Yang, Cheng-Xiang Wang, Rajgopal Kannan, Chin-Chen Chang, Yi Pan. isci, 180(11):2249-2263, 2010. [doi]

A Distributed Efficient Flow Control Scheme for Multirate Multicast NetworksNaixue Xiong, Xiaohua Jia, Laurence Tianruo Yang, Athanasios V. Vasilakos, Yingshu Li, Yi Pan. tpds, 21(9):1254-1266, 2010. [doi]

VRML based collaborative CAM simulation environmentZiqiang Zhou, Yi Pan, Lie Ma, Liguan Shen, Wei Zhao. cscwd 2010: 423-426 [doi]

2009

PLUG: flexible lookup modules for rapid deployment of new protocols in high-speed routersLorenzo De Carli, Yi Pan, Amit Kumar, Cristian Estan, Karthikeyan Sankaralingam. sigcomm 2009: 207-218 [doi]

Novel efficient granular computing models for protein sequence motifs and structure information discoveryBernard Chen, Stephen Pellicer, Phang C. Tai, Robert W. Harrison, Yi Pan. ijcbdd, 2(2):168-186, 2009. [doi]

Gene subsets extraction based on Mutual-Information-based Minimum Spanning Trees modelJieyue He, Fang Zhou, Wei Zhong, Yi Pan. ijcbdd, 2(2):187-203, 2009. [doi]

Tri-Cluster-Tri-Scheme-Training: Exploiting Unlabeled Data for Transmembrane Segments PredictionJieyue He, Robert W. Harrison, Phang C. Tai, Yi Pan. bibe 2009: 168-175 [doi]

An improved method for forecasting enrollments based on fuzzy time series and particle swarm optimizationI-Hong Kuo, Shi-Jinn Horng, Tzong-Wann Kao, Tsung-Lieh Lin, Cheng-Ling Lee, Yi Pan. eswa, 36(3):6108-6117, 2009. [doi]

An efficient flow-shop scheduling algorithm based on a hybrid particle swarm optimization modelI-Hong Kuo, Shi-Jinn Horng, Tzong-Wann Kao, Tsung-Lieh Lin, Cheng-Ling Lee, Takao Terano, Yi Pan. eswa, 36(3):7027-7032, 2009. [doi]

Hierarchical Organization of Functional Modules in Weighted Protein Interaction Networks Using Clustering CoefficientMin Li, Jianxin Wang, Jianer Chen, Yi Pan. isbra 2009: 75-86 [doi]

Construction of Anti-Collusion Codes Based on Cover-Free FamiliesQiaoliang Li, Xiaoming Wang, Yingshu Li, Yi Pan, Pingzhi Fan. itng 2009: 362-365 [doi]

IPBGA: a hybrid P2P based grid architecture by using information pool protocolDeng Li, Zhigang Chen, Hui Liu, Athanasios V. Vasilakos, Yi Pan. tjs, 49(2):159-189, 2009. [doi]

A blind watermarking method using maximum wavelet coefficient quantizationWei-Hung Lin, Yuh-Rau Wang, Shi-Jinn Horng, Tzong-Wann Kao, Yi Pan. eswa, 36(9):11509-11516, 2009. [doi]

Performance evaluation of efficient and reliable routing protocols for fixed-power sensor networksPeter K. K. Loh, Yi Pan, Hsu Jing. TWC, 8(5):2328-2335, 2009. [doi]

Guest Editors Introduction to the Special Section on Bioinformatics Research and ApplicationsIon I. Mandoiu, Yi Pan, Raj Sunderraman, Alexander Zelikovsky. tcbb, 6(2):178-179, 2009. [doi]

Message from the PDSEC-09 workshop chairsBeniamino Di Martino, Christoph W. Kessler, Yi Pan, Thomas Rauber, Gudula RÃ¼nger, Laurence Tianruo Yang. ipps 2009: 1-2 [doi]

Development of Control System for Assisted Circulation Apparatus of Artificial Liver Support SystemYi Pan, Shuming Ye, Hang Chen, Kai Jiang, Yan Sun. bmei 2009: 1-4 [doi]

Practical Deadlock-Free Fault-Tolerant Routing in Meshes Based on the Planar Network Fault ModelDong Xiang, Yueli Zhang, Yi Pan. TC, 58(5):620-633, 2009. [doi]

Comparative analysis of quality of service and memory usage for adaptive failure detectors in healthcare systemsNaixue Xiong, Athanasios V. Vasilakos, L. Yang, Lingyang Song, Yi Pan, Rajgopal Kannan, Yingshu Li. jsac, 27(4):495-509, 2009. [doi]

Design and analysis of an active predictive algorithm in wireless multicast networksNaixue Xiong, Laurence Tianruo Yang, Yi Pan, Athanasios V. Vasilakos, Jing He. ipps 2009: 1-8 [doi]

Design and analysis of a self-tuning feedback controller for the InternetNaixue Xiong, Yi Pan, Xiaohua Jia, Jong Hyuk Park, Yingshu Li. cn, 53(11):1784-1797, 2009. [doi]

Incomplete crossed hypercubesYan-Qing Zhang, Yi Pan. tjs, 49(3):318-333, 2009. [doi]

2008

Protein Sequence Motif Super-Rule-Tree (SRT) Structure Constructed by Hybrid Hierarchical K-Means Clustering AlgorithmBernard Chen, Jieyue He, Stephen Pellicer, Yi Pan. bibm 2008: 98-103 [doi]

Efficient Super Granular SVM Feature Elimination (Super GSVM-FE) model for protein sequence motif information extractionBernard Chen, Stephen Pellicer, Phang C. Tai, Robert W. Harrison, Yi Pan. ijfipm, 1(1):8-25, 2008. [doi]

Rule Extraction from SVM for Protein Structure PredictionJieyue He, Hae-Jin Hu, Bernard Chen, Phang C. Tai, Robert W. Harrison, Yi Pan. In Joachim Diederich, editor, Rule Extraction from Support Vector Machines. Volume 80 of Studies in Computational Intelligence, pages 227-252, Springer, 2008. [doi]

A feasible intrusion detector for recognizing IIS attacks based on neural networksShi-Jinn Horng, Pingzhi Fan, Yao-Ping Chou, Yen-Cheng Chang, Yi Pan. compsec, 27(3-4):84-100, 2008. [doi]

An Optimal Algorithm for Minimizing Cluster Overlap of ACEQiang Hu, Qiaoliang Li, Xiaoming Wang, Naixue Xiong, Yi Pan. wasa 2008: 397-408 [doi]

High performance bio-image database retrieval using MPIYong Li, Xiujuan Chen, Saeid Belkasim, Yi Pan. ijbra, 4(1):49-63, 2008. [doi]

An Efficient Watermarking Method Based on Significant Difference of Wavelet Coefficient QuantizationWei-Hung Lin, Shi-Jinn Horng, Tzong-Wann Kao, Pingzhi Fan, Cheng-Ling Lee, Yi Pan. tmm, 10(5):746-757, 2008. [doi]

Guest Editors Introduction to the Special Section on Bioinformatics Research and ApplicationsIon I. Mandoiu, Yi Pan, Alexander Zelikovsky. tcbb, 5(3):321-322, 2008. [doi]

Scientific computing on public computing platforms - practices and experiencesYi Pan. ipps 2008: 1 [doi]

Efficient placement of proxies for hierarchical reliable multicastLiansheng Tan, Li Jin, Yi Pan. comcom, 31(9):1842-1855, 2008. [doi]

A More Realistic Thinning Scheme for Call Admission Control in Multimedia Wireless NetworksXian Wang, Pingzhi Fan, Yi Pan. TC, 57(8):1143-1147, 2008. [doi]

Ant Colony Optimization-Based Location-Aware Routing for Wireless Sensor NetworksXiaoming Wang, Qiaoliang Li, Naixue Xiong, Yi Pan. wasa 2008: 109-120 [doi]

Deadlock-Free Adaptive Routing in 2D Tori with a New Turn ModelDong Xiang, Qi Wang, Yi Pan. ica3pp 2008: 58-69 [doi]

Deadlock-Free Fully Adaptive Routing in 2-Dimensional Tori Based on New Virtual Network Partitioning SchemeDong Xiang, Yi Pan, Qi Wang, Zhen Chen. icdcs 2008: 454-461 [doi]

Deadlock-Free Fully Adaptive Routing in Tori Based on a New Virtual Network Partitioning SchemeDong Xiang, Qi Wang, Yi Pan. icpp 2008: 612-619 [doi]

Analysis of hybrid P2P overlay network topologyChao Xie, Guihai Chen, Art Vandenberg, Yi Pan. comcom, 31(2):190-200, 2008. [doi]

A Random Key Management Scheme for Wireless Sensor NetworksQing Yang, Qiaoliang Li, Xiaoming Wang, Naixue Xiong, Yi Pan. wasa 2008: 480-490 [doi]

An Approach for Determining Evolutionary Distance in Network-Based Phylogenetic AnalysisTingting Zhou, Keith C. C. Chan, Yi Pan, Zhenghua Wang. isbra 2008: 38-49 [doi]

2007

A Feature Selection Algorithm Based on Graph Theory and Random Forests for Protein Secondary Structure PredictionGulsah Altun, Hae-Jin Hu, Stefan Gremalschi, Robert W. Harrison, Yi Pan. isbra 2007: 590-600 [doi]

NEURONgrid: A Toolkit for Generating Parameter-Space Maps Using NEURON in a Grid EnvironmentRobert J. Calin-Jageman, Chao Xie, Yi Pan, Art Vandenberg, Paul S. Katz. isbra 2007: 182-191 [doi]

Super Granular SVM Feature Elimination (Super GSVM-FE) Model for Protein Sequence Motif Informnation ExtractionBernard Chen, Stephen Pellicer, Phang C. Tai, Robert W. Harrison, Yi Pan. cibcb 2007: 317-322 [doi]

Super Granular Shrink-SVM Feature Elimination (Super GS-SVM-FE) Model for Protein Sequence Motif Information ExtractionBernard Chen, Stephen Pellicer, Phang C. Tai, Robert W. Harrison, Yi Pan. bibe 2007: 379-386 [doi]

A Hierarchical Modeling and Analysis for Grid Service ReliabilityYuan-Shun Dai, Yi Pan, Xukai Zou. TC, 56(5):681-691, 2007. [doi]

Prediction of the disulphide bridges in proteins using SVMAiguo Du, Xiaohua Hu, Yi Pan. ijbra, 3(2):223-233, 2007. [doi]

Optimal fault-tolerant embedding of paths in twisted cubesJianxi Fan, Xiaola Lin, Yi Pan, Xiaohua Jia. jpdc, 67(2):205-214, 2007. [doi]

Statistical Estimate for the Size of the Protein Structural VocabularyXuezheng Fu, Bernard Chen, Yi Pan, Robert W. Harrison. isbra 2007: 530-538 [doi]

Understanding the Prediction of Transmembrane Proteins by Support Vector Machine using Association Rule MiningHae-Jin Hu, Hao Wang, Robert Harrison, Phang C. Tai, Yi Pan. cibcb 2007: 418-425 [doi]

Algorithms and Architectures for Parallel Processing, 7th International Conference, ICA3PP 2007, Hangzhou, China, June 11-14, 2007, ProceedingsHai Jin, Omer F. Rana, Yi Pan, Viktor K. Prasanna, editors, Volume 4494 of Lecture Notes in Computer Science, Springer, 2007.

Analyzing the performance of optical multistage interconnection networks with limited crosstalkAjay K. Katangur, Somasheker Akkaladevi, Yi Pan. cluster, 10(2):241-250, 2007. [doi]

A New Concurrent Detection of Control Flow Errors Based on DCT TechniqueHung-Chuan Lai, Shi-Jinn Horng, Yong-Yuan Chen, Pingzhi Fan, Yi Pan. prdc 2007: 201-209 [doi]

Parallel Contour Matching and 3D Partial Retrieval in Bio-Image DatabaseYong Li, Xiujuan Chen, Saeid Belkasim, Yi Pan. aina 2007: 702-706 [doi]

Reliable and efficient communications in sensor networksPeter Kok Keong Loh, Wen-Jing Hsu, Yi Pan. jpdc, 67(8):922-934, 2007. [doi]

Guest Editors Introduction to the Special Section on Bioinformatics Research and ApplicationsIon I. Mandoiu, Yi Pan, Alexander Zelikovsky. tcbb, 4(4):513-514, 2007. [doi]

A Reliable Metric for Quantifying Multiple Sequence AlignmentKen D. Nguyen, Yi Pan. bibe 2007: 788-795 [doi]

Public Computing - Challenges and SolutionsYi Pan. aina 2007: 1-2 [doi]

Applying Wavelet De-noising to Improve TCP Throughput in AQM queues with Existence of Unresponsive TrafficYi Pan, Wei K. Tsai, Tatsuya Suda. icccn 2007: 541-548 [doi]

Protein Structure Prediction and Its Understanding Based on Machine Learning MethodsYi Pan. bibe 2007: 7 [doi]

An Incremental Algorithm for Mining Default Definite Decision Rules from Incomplete Decision TablesChen Wu, Xiaohua Hu, Xiajiong Shen, Xiaodan Zhang, Yi Pan. grc 2007: 175-179 [doi]

Deadlock-Free Adaptive Routing in Meshes Based on Cost-Effective Deadlock Avoidance SchemesDong Xiang, Yueli Zhang, Yi Pan, Jie Wu. icpp 2007: 41 [doi]

Multiclass Fuzzy Clustering Support Vector Machines for Protein Local Structure PredictionWei Zhong, Jieyue He, Yi Pan. bibe 2007: 21-26 [doi]

Parallel protein secondary structure prediction schemes using Pthread and OpenMP over hyper-threading technologyWei Zhong, Gulsah Altun, Xinmin Tian, Robert W. Harrison, Phang C. Tai, Yi Pan. tjs, 41(1):1-16, 2007. [doi]

Clustering support vector machines for protein local structure predictionWei Zhong, Jieyue He, Robert W. Harrison, Phang C. Tai, Yi Pan. eswa, 32(2):518-526, 2007. [doi]

2006

Hybrid SVM Kernels for Protein Secondary Structure PredictionGulsah Altun, Hae-Jin Hu, Dumitru Brinza, Robert W. Harrison, Alexander Zelikovsky, Yi Pan. grc 2006: 762-765 [doi]

Cysteine separations profiles on protein secondary structure infer disulfide connectivityGuantao Chen, Hai Deng, Yufeng Gui, Yi Pan, Xue Wang. grc 2006: 663-665 [doi]

Multiple Sequence Alignment by Ant Colony Optimization and Divide-and-ConquerYixin Chen, Yi Pan, Juan Chen, Wei Liu, Ling Chen. iccS 2006: 646-653 [doi]

Partitioned optimization algorithms for multiple sequence alignmentYixin Chen, Yi Pan, Juan Chen, Wei Liu, Ling Chen. aina 2006: 618-622 [doi]

ZSBT: A Novel Algorithm for Tracing DoS Attackers in MANETsXin Jin, Yaoxue Zhang, Yi Pan, Yuezhi Zhou. ejwcn, 2006, 2006. [doi]

A Pure Localized Algorithm for Finding Connected Dominating Set in MANETs by Classification of NeighborsHui Liu, Yi Pan, Ivan Stojmenovic. wasa 2006: 371-381 [doi]

Biologically Inspired Cooperative Computing, IFIP 19th World Computer Congress, TC 10: 1st IFIP International Conference on Biologically Inspired Computing, August 21-24, 2006, Santiago, ChileYi Pan, Franz J. Rammig, Hartmut Schmeck, Mauricio Solar, editors, Volume 216 of IFIP, Springer, 2006. [doi]

Transactions on Computational Systems Biology VCorrado Priami, Xiaohua Hu, Yi Pan, Tsau Young Lin, editors, Volume 4070 of Lecture Notes in Computer Science, Springer, 2006.

Phelogenetic Tree Construction using Self adaptive Ant Colony AlgorithmLing Qin, Jianli Luo, Zhimin Chen, Jing Guo, Ling Chen, Yi Pan. imsccs 2006: 179-187 [doi]

Security mechanisms, attacks and security enhancements for the IEEE 802.11 WLANsYang Xiao, Chaitanya Bandela, Xiaojiang Du, Yi Pan, Edilbert Kamal Dass. ijwmc, 1(3/4):276-288, 2006. [doi]

Realization of Intelligent Control for Roll Shape in Roll Grinder NC MachineLiwen Yan, Tao Yu, Yi Pan. prolamat 2006: 505-510 [doi]

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