- Melissa J. Hubisz, Katherine S. Pollard, Adam C. Siepel. PHAST and RPHAST: phylogenetic analysis with space/time models. Briefings in Bioinformatics, 12(1):41-51, 2011.
- Philippe Sanseau, Jacob Koehler. Editorial: Computational methods for drug repurposing. Briefings in Bioinformatics, 12(4):301-302, 2011.
- Anne-Laure Boulesteix. Editorial. Briefings in Bioinformatics, 12(3):187-188, 2011.
- Ulrich Mansmann, Vindi Jurinovic. Biological feature validation of estimated gene interaction networks from microarray data: a case study on MYC in lymphomas. Briefings in Bioinformatics, 12(3):230-244, 2011.
- Kristin K. Nicodemus. Letter to the Editor: On the stability and ranking of predictors from random forest variable importance measures. Briefings in Bioinformatics, 12(4):369-373, 2011.
- Andrés Pinzón, Luis M. Rodriguez-R, Andrés González, Adriana Bernal, Silvia Restrepo. Targeted metabolic reconstruction: a novel approach for the characterization of plant-pathogen interactions. Briefings in Bioinformatics, 12(2):151-162, 2011.
- Inke R. König. Validation in Genetic Association Studies. Briefings in Bioinformatics, 12(3):253-258, 2011.
- Torsten Hothorn, Friedrich Leisch. Case studies in reproducibility. Briefings in Bioinformatics, 12(3):288-300, 2011.
- Danny Barash, Alexander Churkin. Mutational analysis in RNAs: comparing programs for RNA deleterious mutation prediction. Briefings in Bioinformatics, 12(2):104-114, 2011.
- Peter J. Castaldi, Issa J. Dahabreh, John P. A. Ioannidis. An empirical assessment of validation practices for molecular classifiers. Briefings in Bioinformatics, 12(3):189-202, 2011.