- Ariel E. Bayá, Pablo M. Granitto. Clustering gene expression data with a penalized graph-based metric. BMC Bioinformatics, 12:2, 2011.
- Mohan Krishnamoorthy, Pragneshkumar Patel, Mira Dimitrijevic, Jonathan Dietrich, Margaret Green, Catherine Macken. Tree Pruner: An efficient tool for selecting data from a biased genetic database. BMC Bioinformatics, 12:51, 2011.
- Sebastian G. A. Konietzny, Laura Dietz, Alice C. McHardy. Inferring functional modules of protein families with probabilistic topic models. BMC Bioinformatics, 12:141, 2011.
- Damien Paulet, Mireille Claustres, Christophe Béroud. Hydrophobic pulses predict transmembrane helix irregularities and channel transmembrane units. BMC Bioinformatics, 12:135, 2011.
- Tulaya Limpiti, Apichart Intarapanich, Anunchai Assawamakin, Philip J. Shaw, Pongsakorn Wangkumhang, Jittima Piriyapongsa, Chumpol Ngamphiw, Sissades Tongsima. Study of large and highly stratified population datasets by combining iterative pruning principal component analysis and STRUCTURE. BMC Bioinformatics, 12:255, 2011.
- Oleksii Kuchaiev, Aleksandar Stevanovic, Wayne Hayes, Natasa Przulj. GraphCruch 2: Software tool for network modeling, alignment and clustering. BMC Bioinformatics, 12:24, 2011.
- Yongchao Liu, Bertil Schmidt, Douglas L. Maskell. DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI. BMC Bioinformatics, 12:85, 2011.
- Martin O. Jones, Georgios D. Koutsovoulos, Mark L. Blaxter. iPhy: an integrated phylogenetic workbench for supermatrix analyses. BMC Bioinformatics, 12:30, 2011.
- Raffaele Fronza, Michele Tramonti, William R. Atchley, Christine Nardini. Joint Analysis of Transcriptional and post- Transcriptional Data: Searching Emergent Properties in Brain Tumor Samples. BMC Bioinformatics, 12:86, 2011.
- Hatice U. Osmanbeyoglu, Madhavi Ganapathiraju. N-gram analysis of 970 microbial organisms reveals presence of biological language models. BMC Bioinformatics, 12:12, 2011.