- William R. Hogan. Towards an ontological theory of substance intolerance and hypersensitivity. Journal of Biomedical Informatics, 44(1):26-34, 2011.
- Monica M. Horvath, Stephanie Winfield, Steve Evans, Steve Slopek, Howard Shang, Jeffrey M. Ferranti. The DEDUCE Guided Query tool: Providing simplified access to clinical data for research and quality improvement. Journal of Biomedical Informatics, 44(2):266-276, 2011.
- Loubna Bouarfa, Pieter P. Jonker, Jenny Dankelman. Discovery of high-level tasks in the operating room. Journal of Biomedical Informatics, 44(3):455-462, 2011.
- Fulvia Ferrazzi, Felix B. Engel, Erxi Wu, Annie P. Moseman, Isaac S. Kohane, Riccardo Bellazzi, Marco Ramoni. Inferring cell cycle feedback regulation from gene expression data. Journal of Biomedical Informatics, 44(4):565-575, 2011.
- Pantelis Topalis, Emmanuel Dialynas, Elvira Mitraka, Elena Deligianni, Inga Siden-Kiamos, Christos Louis. A set of ontologies to drive tools for the control of vector-borne diseases. Journal of Biomedical Informatics, 44(1):42-47, 2011.
- Christa E. Bartos, Brian S. Butler, Rebecca S. Crowley. Ranked Levels of Influence model: Selecting influence techniques to minimize IT resistance. Journal of Biomedical Informatics, 44(3):497-504, 2011.
- Pinar Wennerberg, Klaus Schulz, Paul Buitelaar. Ontology modularization to improve semantic medical image annotation. Journal of Biomedical Informatics, 44(1):155-162, 2011.
- Jessica D. Tenenbaum, Patricia L. Whetzel, Kent Anderson, Charles D. Borromeo, Ivo D. Dinov, Davera Gabriel, Beth A. Kirschner, Barbara Mirel, Timothy D. Morris, Natasha Fridman Noy, Csongor Nyulas, David Rubenson, Paul R. Saxman, Harpreet Singh, Nancy Whelan, Zach Wright, Brian D. Athey, Michael J. Becich, Geoffrey S. Ginsburg, Mark A. Musen, Kevin A. Smith, Alice F. Tarantal, Daniel L. Rubin, Peter Lyster. The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research. Journal of Biomedical Informatics, 44(1):137-145, 2011.
- Kaihong Liu, William R. Hogan, Rebecca S. Crowley. Natural Language Processing methods and systems for biomedical ontology learning. Journal of Biomedical Informatics, 44(1):163-179, 2011.
- Liang-Chih Yu, Chien-Lung Chan, Chao-Cheng Lin, I.-Chun Lin. Mining association language patterns using a distributional semantic model for negative life event classification. Journal of Biomedical Informatics, 44(4):509-518, 2011.