| 185 | -- | 188 | Feng Lin, Heiko Schröder, Bertil Schmidt. Solving the Bottleneck Problem in Bioinformatics Computing: An Architectural Perspective |
| 189 | -- | 208 | Euripides Sotiriades, Apostolos Dollas. A General Reconfigurable Architecture for the BLAST Algorithm |
| 209 | -- | 221 | Weiguo Liu, Bertil Schmidt, Wolfgang Müller-Wittig. Performance Analysis of General-Purpose Computation on Commodity Graphics Hardware: A Case Study Using Bioinformatics |
| 223 | -- | 238 | John Paul Walters, Xiandong Meng, Vipin Chaudhary, Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt, Darran Nathan, Joseph I. Landman. MPI-HMMER-Boost: Distributed FPGA Acceleration |
| 239 | -- | 254 | Maria Stepanova, Feng Lin, Valerie C.-L. Lin. A Hopfield Neural Classifier and Its FPGA Implementation for Identification of Symmetrically Structured DNA Motifs |
| 255 | -- | 269 | Dominique Lavenier, Gilles Georges, X. Liu. A Reconfigurable Index FLASH Memory tailored to Seed-Based Genomic Sequence Comparison Algorithms |
| 271 | -- | 286 | Alexandros Stamatakis, Filip Blagojevic, Dimitrios S. Nikolopoulos, Christos D. Antonopoulos. Exploring New Search Algorithms and Hardware for Phylogenetics: RAxML Meets the IBM Cell |
| 287 | -- | 299 | Yoshiki Yamaguchi, Tsutomu Maruyama, Ryuzo Azuma, Moritoshi Yasunaga, Akihiko Konagaya. Mesoscopic-level Simulation of Dynamics and Interactions of Biological Molecules Using Monte Carlo Simulation |
| 301 | -- | 309 | Chunxi Chen, Jagath C. Rajapakse. Grid-Enabled BLASTZ: Application to Comparative Genomics |
| 311 | -- | 324 | Frank Zhigang Wang, Na Helian, Sining Wu, Yuhui Deng, Vineet R. Khare, Chris Thompson. Grid-Based Storage Architecture for Accelerating Bioinformatics Computing |