Table of Contents

• Prediction of the Number of Helices for the Twilight Zone ProteinsKanaka Durga Kedarisetti, Ke Chen, Aashima Kapoor, Lukasz A. Kurgan. 1-7 [doi]
• A Fast Algorithm for Detecting Frame Shifts in DNA sequencesHassan Masoom, Suprakash Datta, Amir Asif, Lesley Cunningham, Gillian Wu. 1-8 [doi]
• Feature Selection using a Random Forests Classifier for the Integrated Analysis of Multiple Data TypesDavid M. Reif, Alison A. Motsinger, Brett A. McKinney, James E. Crowe Jr., Jason H. Moore. 1-8 [doi]
• A Model-Free Greedy Gene Selection for Microarray Sample Class PredictionYi Shi, Zhipeng Cai, Lizhe Xu, Wei Ren, Randy Goebel, Guohui Lin. 1-8 [doi]
• An Exploration of Differential Utility in Iterated Prisoner s DilemmaDan Ashlock, Wendy Ashlock, Gary Umphry. 1-8 [doi]
• Protein-Protein Interface Residue Prediction with SVM Using Evolutionary Profiles and Accessible Surface AreasMinh Ngoc Nguyen 0002, Jagath C. Rajapakse. 1-5 [doi]
• A Systematic Approach for Identifying Regulatory Interactions in Large Temporal Gene Expression Datasets from Peripheral BloodSimon Knott, Parvin Mousavi, Sergio Baranzini. 1-8 [doi]
• Integrating Affymetrix microarray data sets using probe-level test statistic for predicting prostate cancerPingzhao Hu, Celia M. T. Greenwood, Joseph Beyene. 1-8 [doi]
• A Differential Evolution Approach for Protein FoldingReginaldo Bitello, Heitor S. Lopes. 1-5 [doi]
• Feature Selection Approach for Quantitative Prediction of Transcriptional ActivitiesAshish Anand, Gary B. Fogel, E. Ke Tang, Ponnuthurai N. Suganthan. 1-6 [doi]
• Classification of Relapse Ovarian Cancer on MALDI-TOF Mass Spectrometry DataJung Hun Oh, Animesh Nandi, Prem Gurnani, Lynne Knowles, John Schorge, Kevin P. Rosenblatt, Jean Gao. 1-8 [doi]
• A Systematic Computational Approach for Transcription Factor Target Gene PredictionJi He, Xinbin Dai, Xuechun Zhao. 1-7 [doi]
• A Fuzzy Kohonen SOM Implementation and Clustering of Bio-active Compound Structures for Drug DiscoveryJehan Zeb Shah, Naomie Salim. 1-6 [doi]
• A Random Walk Modelling Approach for Passive Metabolic Pathways in Gram-Negative BacteriaAmin R. Mazloom, Kalyan Basu, Sajal K. Das. 1-8 [doi]
• Aggregating Homologous Protein Families in Evolutionary Reconstructions of HerpesvirusesBoris Mirkin, Renata da Silva Camargo, Trevor I. Fenner, George Loizou, Paul Kellam. 1-8 [doi]
• A method to integrate, assess and characterize the protein-protein interactionsFa Zhang, Lin Xu, Jingchun Chen, Zhiyong Liu, Bo Yuan. 1-7 [doi]
• Fuzzy C-means for inferring functional coupling of proteins from their phylogenetic profilesJuan Carlos Fernández, Edgar E. Vallejo, Enrique Morett. 1-8 [doi]
• Gene Ontology Driven Feature Selection from Microarray Gene Expression DataJianlong Qi, Jian Tang. 1-7 [doi]
• P-found: The Protein Folding and Unfolding Simulation RepositoryCândida G. Silva, Vitaliy Ostropytskyy, Nuno Loureiro-Ferreira, Daniel P. Berrar, Martin Swain, Werner Dubitzky, Rui M. M. Brito. 1-8 [doi]
• The Image Registration of TME Biomedical Images in variant Creutzfeldt-Jakob DiseasesMariusz Zubert, Malgorzata Napieralska, Andrzej Napieralski, Beata Sikorska, Pawel Liberski, Rafal Grams. 1-8 [doi]
• Visualization of Support Vector Machines with Unsupervised LearningLutz Hamel. 1-8 [doi]
• Inference of Gene Regulatory Networks from Time Course Gene Expression Data Using Neural Networks and Swarm IntelligenceHabtom W. Ressom, Yuji Zhang, Jianhua Xuan, Yue Wang, Robert Clarke. 1-8 [doi]
• A Bayesian approach to pairwise RNA Secondary Structure AlignmentZhuozhi Wang, Elisabeth R. M. Tillier. 1-8 [doi]
• A Systematic Statistical Process for Microarray Data Analysis: Countering the Limitations in the Public Data SetsJarukit Lertbantanawong, Jonathan H. Chan. 1-8 [doi]
• An Evolutionary Algorithm for the Selection of Geographically Informative SpeciesDan Ashlock, Karl Cottenie, Lindsey Carson, Kenneth Mark Bryden, Steven M. Corns. 1-7 [doi]
• A Comparative Study on Feature Extraction from Protein Sequences for Subcellular Localization PredictionWen-Yun Yang, Bao-Liang Lu, Yang Yang. 1-8 [doi]
• Bottom-Up Biclustering of Expression DataKenneth Bryan, Padraig Cunningham. 1-8 [doi]
• Motif Evaluation by Leave-one-out ScoringAudrey Girouard, Noah W. Smith, Donna K. Slonim. 1-7 [doi]
• A Stochastic model to estimate the time taken for Protein-Ligand DockingPreetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das, Simon Daefler. 1-8 [doi]
• Causal Modeling of Gene Regulatory NetworkRamesh Ram, Madhu Chetty, Trevor I. Dix. 1-8 [doi]
• E2D: A Novel Tool for Annotating Protein Domains in Expressed Sequence TagsGuo-Hsing Lee, Nai-Yu Chuang, Wen-Dar Lin, Chung-Der Hsiao, Hahn-Ming Lee, Jan-Ming Ho. 1-6 [doi]
• Inferring functional coupling of proteins using the Evolutionary Bond Energy AlgorithmRyosuke Watanabe, Edgar E. Vallejo, Enrique Morett. 1-6 [doi]
• Analysis of Thermodynamic Models and Performance in RnaPredict - An Evolutionary Algorithm for RNA FoldingKay C. Wiese, Andrew Hendriks, Alain Deschênes. 1-9 [doi]
• Determination of the Relative Importance of Gene Function or Taxonomic Grouping to Codon Usage Bias Using Cluster Analysis and SVMsJianmin Ma, Minh Ngoc Nguyen 0002, Gary B. Fogel, Jagath C. Rajapakse. 1-8 [doi]
• Machine Learning in Basecalling Decoding Trace Peak BehaviourDavid Thornley, Stavros Petridis. 1-8 [doi]
• Efficient Probe Selection in Microarray DesignLeszek Gasieniec, Cindy Y. Li, Paul Sant, Prudence W. H. Wong. 1-8 [doi]
• Bayesian Segmentation using Residue Proximity for Secondary Structure and Contact PredictionNiranjan P. Bidargaddi, Madhu Chetty, Joarder Kamruzzaman. 1-8 [doi]
• A profile-based protein sequence alignment algorithm for a domain clustering databaseLin Xu, Fa Zhang, Zhiyong Liu. 1-8 [doi]
• G Protein-Coupled Receptor Classification at the Subfamily Level with Probabilistic Suffix TreeJingyi Yang, Jitender S. Deogun. 1-8 [doi]
• Covariance Searches for ncRNA Gene FindingScott F. Smith 0002. 1-7 [doi]
• Optimization of the Sliding Window Size for Protein Structure PredictionKe Chen, Lukasz A. Kurgan, Jishou Ruan. 1-7 [doi]
• A New Approach to Identify Functional Modules Using Random Matrix TheoryMengxia Zhu, Qishi Wu, Yunfeng Yang, Jizhong Zhou. 1-7 [doi]
• A Fast Multivariate Feature-Selection/Classification Approach for Prediction of Therapy Response in Multiple SclerosisSara Mostafavi, Sergio Baranzini, Jorge Oksenberg, Parvin Mousavi. 1-8 [doi]
• A Swarm Intelligence Based Algorithm for Proteomic Pattern Detection of Ovarian CancerYan Meng. 1-7 [doi]
• Biomarker Identification and Rule Extraction from Mass Spectral Serum ProfilesHabtom W. Ressom, Rency S. Varghese, Eduard Orvisky, Steven K. Drake, Glen L. Hortin, Mohamed Abdel-Hamid, Christopher A. Loffredo, Radoslav Goldman. 1-7 [doi]
• A New Hybrid Approach for Unsupervised Gene SelectionYoung Bun Kim, Jean Gao. 1-8 [doi]
• Classification of Scleroderma and Normal Biopsy Data and Identification of Possible Biomarkers of the DiseaseTopon Kumar Paul, Hitoshi Iba. 1-6 [doi]
• Detecting Similarities between Families of Bio-sequences using the Steady-State of a PCA-Neural NetworkMosaab Daoud, Stefan C. Kremer. 1-7 [doi]
• A Hidden Markov Model Approach to Identifying HTH Motifs Using Protein Sequence and Predicted Solvent AccessibilityChanghui Yan, Jing Hu. 1-7 [doi]
• Iris Recognition Algorithm Optimized for Hardware ImplementationKamil Grabowski, Wojciech Sankowski, Malgorzata Napieralska, Mariusz Zubert, Andrzej Napieralski. 1-5 [doi]
• A Novel Graphical Model Approach to Segmenting Cell ImagesShann-Ching Chen, Ting Zhao, Geoffrey J. Gordon, Robert F. Murphy. 1-8 [doi]
• Filtration and Depth Annotation Improve Non-linear Projection for RNA Motif DiscoveryJustin Schonfeld, Dan Ashlock. 1-8 [doi]
• SARNA-Predict: A Simulated Annealing Algorithm for RNA Secondary Structure PredictionHerbert H. Tsang, Kay C. Wiese. 1-10 [doi]
• Clinical Characterization of Electromyographic Data Using Computational ToolsAndrew Hamilton-Wright, Daniel W. Stashuk. 1-7 [doi]
• A Systematic Approach for Identifying Regulatory Interactions in Large Temporal Gene Expression Datasets from Peripheral BloodSimon Knott, Parvin Mousavi, Sergio Baranzini. 1-8 [doi]
• Using Voronoi Grid and SVM Linear Regression in Drug DiscoveryA. Ammar Ghaibeh, Mikio Sasaki, Hiroshi Chuman. 1-6 [doi]
• Developing Antibiotic Regimens Using Evolutionary AlgorithmsSteven M. Corns, H. Scott Hurd, Dan Ashlock, Kenneth Mark Bryden. 1-6 [doi]
• Clustering and Cross-talk in a Yeast Functional Interaction NetworkJennifer Hallinan, Anil Wipat. 1-8 [doi]
• PSpice Simulation of Cardiac Impulse Propagation: studying the mechanisms of action potential propagationSomayeh Mahdav, Shahriar Gharibzadeh, Mostafa Rezaei-Tavirani, Farzad Towhidkhah, Soheil Shafiee. 1-5 [doi]
• Bootstrap Inference with Neural-Network Modeling for Gene-Disease Association TestingNelli Shimko, Marie-Pierre Dube. 1-7 [doi]
• Understanding the Evolutionary Process of Grammatical Evolution Neural Networks for Feature Selection in Genetic EpidemiologyAlison A. Motsinger, David M. Reif, Scott M. Dudek, Marylyn D. Ritchie. 1-8 [doi]
• Non-Isomorphic Coding in Lattice Model and its Impact for Protein Folding Prediction Using Genetic AlgorithmTamjidul Hoque, Madhu Chetty, Laurence S. Dooley. 1-8 [doi]
• Data Visualization with Simultaneous Feature SelectionDharmesh M. Maniyar, Ian T. Nabney. 1-8 [doi]
• A Fuzzy Data Mining Technique for the Reconstruction of Gene Regulatory Networks from Time Series Expression DataPatrick C. H. Ma, Keith C. C. Chan. 1-8 [doi]
• Bicluster Analysis of Genome-Wide Gene ExpressionKuanchung Chen, Yuh-Jyh Hu. 1-7 [doi]
• Predicting Protein-Protein Interface using Desolvation Energy Similarity MatchingYasir Arafat, Gour C. Karmakar, Joarder Kamruzzaman, Juan Fernández-Recio. 1-8 [doi]
• Identification of non random motifs in loops using a structural alphabetLeslie Regad, Juliette Martin, Anne-Claude Camproux. 1-9 [doi]