Table of Contents

• Computationally resolving heterogeneity in mixed genomic samplesRussell Schwartz. 1 [doi]
• Are circulating type 2 Vaccine-Derived Polioviruses (VDPVs) genetically distinguishable from immunodeficiency-associated VDPVs?Kun Zhao, Jaume Jorba, Jane Iber, Qi Chen, Jing Shaw, Kelley Bullard, Olen Kew, Cara Burns. 1 [doi]
• A deep learning-based segmentation method for brain tumor in MR imagesZhe Xiao, Ruohan Huang, Yi Ding, Tian Lan, RongFeng Dong, Zhiguang Qin, Xinjie Zhang, Wei Wang. 1-6 [doi]
• Accurate prediction of human miRNA targets via graph modeling of miRNA-target duplexMohammad Mohebbi, Liang Ding, Russell L. Malmberg, Cory Momany, Khaled Rasheed, Liming Cai. 1 [doi]
• Prediction of missing common genes for disease pairs using network based module separationPakeeza Akram, Li Liao. 1 [doi]
• HRVCam: A software for real-time feedback of heart rate and HRVP. H. Souza, Jose Olimpio Ferreira, Talles Marcelo G. de A. Barbosa, Adson Ferreira da Rocha. 1-6 [doi]
• Detecting intermediate protein conformations using algebraic topologyNurit Haspel, Dong Luo, Eduardo Gonzalez. 1 [doi]
• Detecting patterns of co-variation in deep-sequenced virus populationsSusana Posada-Cespedes, David Seifert, Niko Beerenwinkel. 1 [doi]
• Phylogenetic uncertainty and transmission network inference: Lessons from phylogenetic reconciliationMukul S. Bansal. 1 [doi]
• Semi-automatic mining of correlated data from a complex database: Correlation network visualizationMatej Lexa, Radovan Lapar. 1-2 [doi]
• Genome-wide identification and evolutionary analysis of long non-coding RNAs in cerealsYing Sun, Willie L. Rogers, Katrien M. Devos, Liming Cai, Russell L. Malmberg. 1 [doi]
• Poster: Diagnosing and treating code-duplication problems in bioinformatics librariesMohammad Shabbir Hasan, Saima Sultana Tithi, Eli Tilevich, Liqing Zhang. 1-2 [doi]
• Utilizing knowledge base of amino acids structural neighborhoods to predict protein-protein interaction sitesJan Jelinek, Petr Skoda, David Hoksza. 1 [doi]
• NanoBLASTer: Fast alignment and characterization of Oxford Nanopore single molecule sequencing readsMohammad Ruhul Amin, Steven Skiena, Michael C. Schatz. 1-6 [doi]
• Curvelet-based texture classification of critical Gleason patterns of prostate histological imagesWen-Chyi Lin, Ching-Chung Li, Jonathan I. Epstein, Robert W. Veltri. 1-6 [doi]
• Higher recall in metagenomic sequence classification exploiting Overlapping ReadsSamuele Girotto, Matteo Comin, Cinzia Pizzi. 1 [doi]
• Cache and energy efficient algorithms for Nussinov RNA foldingChunchun Zhao, Sartaj Sahni. 1 [doi]
• UPS-indel: A better approach for finding indel redundancyMohammad Shabbir Hasan, Xiaowei Wu, Layne T. Watson, Zhiyi Li, Liqing Zhang. 1 [doi]
• JULiP: An efficient model for accurate intron selection from multiple RNA-seq samplesGuangyu Yang, Liliana Florea. 1-6 [doi]
• CAMSA: A tool for comparative analysis and merging of scaffold assembliesSergey Aganezov Jr., Max A. Alekseyev. 1 [doi]
• Pairing T Cell Receptor α and β sequences using pooling and min-cost flowsTyler Daddio, Ion I. Mandoiu. 1 [doi]
• An accurate and customizable text classification algorithm: Two applications in healthcareMohammed Aldhoayan, Leming Zhou. 1-4 [doi]
• A deep learning method for lincRNA identification using auto-encoder algorithmNing Yu, Zeng Yu, Yi Pan. 1 [doi]
• Computational analysis of drug addiction epidemiology by integrating molecular mapping and social media signalsRahul Singh. 1 [doi]
• Region-based custom chip description formats for reanalysis of publicly available affymetrix® genechip® data setsErnur Saka, Benjamin J. Harrison, Kirk West, Jeffrey C. Petruska, Eric C. Rouchka. 1 [doi]
• Automatic analysis of neonatal video data to evaluate resuscitation performanceYue Guo, Johan Wrammert, Kavita Singh, Ashish K. C., Kira Bradford, Ashok Krishnamurthy. 1-6 [doi]
• JULiP: An efficient model for accurate intron selection from multiple RNA-seq samplesGuangyu Yang, Liliana Florea. 1 [doi]
• Identifying hotspots in five year survival electronic health records of older adultsAnkit Agrawal, Jason Scott Mathias, David Baker, Alok N. Choudhary. 1-6 [doi]
• Fast algorithms for computing phylogenetic divergence timeRalph W. Crosby, Tiffani L. Williams. 1 [doi]
• RocSampler: Regularizing overlapping protein complexes in protein-protein interaction networksOsamu Maruyama, Yuki Kuwahara. 1 [doi]
• Single molecule sequencing-guided scaffolding and correction of draft assembliesShenglong Zhu, Danny Z. Chen, Scott J. Emrich. 1 [doi]
• A divide-and-conquer algorithm for large-scale de novo transcriptome assembly through combining small assemblies from existing algorithmsSing-Hoi Sze, Jonathan J. Parrott, Aaron M. Tarone. 1 [doi]
• Assessing how multiple mutations affect protein stability using rigid cluster size distributionsErik Andersson, Rebecca Hsieh, Howard Szeto, Roshanak Farhoodi, Nurit Haspel, Filip Jagodzinski. 1-6 [doi]