Table of Contents

• Towards an Integrated, Web-executable Parallel Programming Tool EnvironmentInsung Park, Nirav H. Kapadia, Renato J. O. Figueiredo, Rudolf Eigenmann, José A. B. Fortes. [doi]
• Performance Modeling and Tuning of an Unstructured Mesh CFD ApplicationWilliam Gropp, Dinesh K. Kaushik, David E. Keyes, Barry F. Smith. [doi]
• Distributed Rendering for Scalable DisplaysGreg Humphreys, Ian Buck, Matthew Eldridge, Pat Hanrahan. [doi]
• A Framework for Sparse Matrix Code Synthesis from High-level SpecificationsNawaaz Ahmed, Nikolay Mateev, Keshav Pingali, Paul Stodghill. [doi]
• 1.34 Tflops Molecular Dynamics Simulation for NaCl with a Special-Purpose Computer: MDMTetsu Narumi, Ryutaro Susukita, Takahiro Koishi, Kenji Yasuoka, Hideaki Furusawa, Atsushi Kawai, Toshikazu Ebisuzaki. [doi]
• Parallel Phylogenetic InferenceQuinn Snell, Michael Whiting, Mark J. Clement, David McLaughlin. [doi]
• The Failure of TCP in High-Performance Computational GridsWu-chun Feng, Peerapol Tinnakornsrisuphap. [doi]
• Using Hardware Performance Monitors to Isolate Memory BottlenecksBryan R. Buck, Jeffrey K. Hollingsworth. [doi]
• Data Access Performance in a Large and Dynamic Pharmaceutical Drug Candidate DatabaseZina Ben-Miled, Yang Liu, David Powers, Omran A. Bukhres, Michael Bem, Robert Jones, Robert J. Oppelt, Samuel Milosevich. [doi]
• Expressing and Enforcing Distributed Resource Sharing AgreementsTao Zhao, Vijay Karamcheti. [doi]
• High Performance Reactive Fluid Flow Simulations Using Adaptive Mesh Refinement on Thousands of ProcessorsA. C. Calder, Bruce C. Curtis, L. J. Dursi, Bruce Fryxell, Greg Henry, Peter MacNeice, Kevin Olson, P. Ricker, R. Rosner, F. X. Timmes, Henry M. Tufo, J. W. Turan, Michael Zingale. [doi]
• From Trace Generation to Visualization: A Performance Framework for Distributed Parallel SystemsChing-Farn Eric Wu, Anthony Bolmarcich, Marc Snir, David Wootton, Farid Parpia, Anthony Chan, Ewing L. Lusk, William Gropp. [doi]
• A Unified Algorithm for Load-balancing Adaptive Scientific SimulationsKirk Schloegel, George Karypis, Vipin Kumar. [doi]
• Computing and Data Grids for Science and EngineeringWilliam E. Johnston, Dennis Gannon, Bill Nitzberg, Leigh Ann Tanner, Bill Thigpen, Alex Woo. [doi]
• A 1.349 Tflops Simulation of Black Holes in a Galactic Center on GRAPE-6Junichiro Makino, Toshiyuki Fukushige, Masaki Koga. [doi]
• Tiling Optimizations for 3D Scientific ComputationsGabriel Rivera, Chau-Wen Tseng. [doi]
• Scalable Algorithms for Adaptive Statistical DesignsRobert H. Oehmke, Janis Hardwick, Quentin F. Stout. [doi]
• Tiling Imperfectly-Nested Loop NestsNawaaz Ahmed, Nikolay Mateev, Keshav Pingali. [doi]
• 98¢/Mflops/s, Ultra-Large-Scale Neural-Network Training on a PIII ClusterDouglas Aberdeen, Jonathan Baxter, Robert Edwards. [doi]
• Automatically Tuned Collective CommunicationsSathish S. Vadhiyar, Graham E. Fagg, Jack Dongarra. [doi]
• Dynamic Software Testing of MPI Applications with UmpireJeffrey S. Vetter, Bronis R. de Supinski. [doi]
• Realizing Fault Resilience in Web-Server ClusterChu-Sing Yang, Mon-Yen Luo. [doi]
• Real-Time Biomechanical Simulation of Volumetric Brain Deformation for Image Guided NeurosurgerySimon K. Warfield, Matthieu Ferrant, Xavier Gallez, Arya Nabavi, Ferenc A. Jolesz, Ron Kikinis. [doi]
• Scalable Molecular Dynamics for Large Biomolecular SystemsRobert Brunner, James C. Phillips, Laxmikant V. Kalé. [doi]
• Using High-Speed WANs and Network Data Caches to Enable Remote and Distributed VisualizationE. Wes Bethel, Brian Tierney, Jason Lee, Dan Gunter, Stephen Lau. [doi]
• A Comparison of Three Programming Models for Adaptive Applications on the Origin2000Hongzhang Shan, Jaswinder Pal Singh, Leonid Oliker, Rupak Biswas. [doi]
• Hardware Prediction for Data Coherency of Scientific Codes on DSMJean-Thomas Acquaviva, William Jalby. [doi]
• Parallel Unsteady Turbo-Pump Simulations For Liquid Rocket EnginesCetin C. Kiris, Dochan Kwak, William Chan. [doi]
• Parallel Smoothed Aggregation Multigrid: Aggregation Strategies on Massively Parallel MachinesRay S. Tuminaro, Charles Tong. [doi]
• Efficient Wire Formats for High Performance ComputingFabián E. Bustamante, Greg Eisenhauer, Karsten Schwan, Patrick Widener. [doi]
• A Scalable SNMP-Based Distributed Monitoring System For Heterogeneous Network ComputingRajesh Subramanyan, José Miguel-Alonso, José A. B. Fortes. [doi]
• High-Cost CFD on a Low-Cost ClusterThomas Hauser, Timothy Mattox, Raymond P. LeBeau, Henry G. Dietz, P. George Huang. [doi]
• Performance and Interoperability Issues in Incorporating Cluster Management Systems Within a Wide-Area Network-Computing EnvironmentSumalatha Adabala, Nirav H. Kapadia, José A. B. Fortes. [doi]
• MPICH-GQ: Quality-of-Service for Message Passing ProgramsAlain J. Roy, Ian T. Foster, William Gropp, Nicholas T. Karonis, Volker Sander, Brian R. Toonen. [doi]
• Requirements for and Evaluation of RMI Protocols for Scientific ComputingMadhusudhan Govindaraju, Aleksander Slominski, Venkatesh Choppella, Randall Bramley, Dennis Gannon. [doi]
• A Wrapper Generator for Wrapping High Performance Legacy Codes as Java/CORBA ComponentsMaozhen Li, Omer F. Rana, Matthew S. Shields, David W. Walker. [doi]
• A Parallel Dynamic-Mesh Lagrangian Method for Simulation of Flows with Dynamic InterfacesJames F. Antaki, Guy E. Blelloch, Omar Ghattas, Ivan Malcevic, Gary L. Miller, Noel Walkington. [doi]
• PSockets: The Case for Application-level Network Striping for Data Intensive Applications using High Speed Wide Area NetworksHarimath Sivakumar, Stuart Bailey, Robert L. Grossman. [doi]
• An Object-Oriented Job Execution EnvironmentLance Smith, Rod Fatoohi. [doi]
• High Performance Visualization of Time-Varying Volume Data over a Wide-Area Network StatusKwan-Liu Ma, David M. Camp. [doi]
• Performance of Hybrid Message-Passing and Shared-Memory Parallelism for Discrete Element ModelingD. S. Henty. [doi]
• Parallel Algorithms for Radiation Transport on Unstructured GridsSteve Plimpton, Bruce Hendrickson, Shawn Burns, Will McLendon III. [doi]
• Is Data Distribution Necessary in OpenMP?Dimitrios S. Nikolopoulos, Theodore S. Papatheodorou, Constantine D. Polychronopoulos, Jesús Labarta, Eduard Ayguadé. [doi]
• Extending OpenMP for NUMA MachinesJohn Bircsak, Peter Craig, RaeLyn Crowell, Zarka Cvetanovic, Jonathan Harris, C. Alexander Nelson, Carl D. Offner. [doi]
• MPI versus MPI+OpenMP on IBM SP for the NAS BenchmarksFranck Cappello, Daniel Etiemble. [doi]
• PM2: A High Performance Communication Middleware for Heterogeneous Network EnvironmentsToshiyuki Takahashi, Shinji Sumimoto, Atsushi Hori, Hiroshi Harada, Yutaka Ishikawa. [doi]
• Integrating Parallel File I/O and Database Support for High-Performance Scientific Data ManagementJaechun No, Rajeev Thakur, Alok N. Choudhary. [doi]
• Landing CG on EARTH: A Case Study of Fine-Grained Multithreading on an Evolutionary PathKevin B. Theobald, Gagan Agrawal, Rishi Kumar, Gerd Heber, Guang R. Gao, Paul Stodghill, Keshav Pingali. [doi]
• A Tool Framework for Static and Dynamic Analysis of Object-Oriented Software with TemplatesKathleen A. Lindlan, Janice E. Cuny, Allen D. Malony, Sameer Shende, Bernd Mohr, Reid Rivenburgh, Craig Edward Rasmussen. [doi]
• Single sided MPI implementations for SUN MPIStephen Booth, Fernando Elson Mourão. [doi]
• A Scalable Cross-Platform Infrastructure for Application Performance Tuning Using Hardware CountersShirley Browne, Jack Dongarra, N. Garner, Kevin S. London, Philip Mucci. [doi]
• The MicroGrid: a Scientific Tool for Modeling Computational GridsHyo Jung Song, Xianan Liu, Dennis Jakobsen, Ranjita Bhagwan, Xingbin Zhang, Kenjiro Taura, Andrew A. Chien. [doi]
• A Comparative Study of the NAS MG Benchmark across Parallel Languages and ArchitecturesBradford L. Chamberlain, Steven J. Deitz, Lawrence Snyder. [doi]
• Architectural and Performance Evaluation of GigaNet and Myrinet Interconnects on Clusters of Small-Scale SMP ServersJenwei Hsieh, Tau Leng, Victor Mashayekhi, Reza Rooholamini. [doi]
• Computer Simulations of Cardiac ElectrophysiologyJohn B. Pormann, Craig S. Henriquez, John A. Board Jr., Donald J. Rose, David M. Harrild, Alexandra P. Henriquez. [doi]
• The Implementation of MPI-2 One-Sided Communication for the NEC SX-5Jesper Larsson Träff, Hubert Ritzdorf, Rolf Hempel. [doi]