Table of Contents

• Programming bits and atomsNeil Gershenfeld. 1 [doi]
• A preliminary investigation of a neocortex model implementation on the Cray XD1Kenneth L. Rice, Christopher N. Vutsinas, Tarek M. Taha. 2 [doi]
• Anatomy of a cortical simulatorRajagopal Ananthanarayanan, Dharmendra S. Modha. 3 [doi]
• Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/LMichael Ott, Jaroslaw Zola, Alexandros Stamatakis, Srinivas Aluru. 4 [doi]
• Age-based packet arbitration in large-radix ::::k::::-ary ::::n::::-cubesDennis Abts, Deborah K. Weisser. 5 [doi]
• Performance adaptive power-aware reconfigurable optical interconnects for high-performance computing (HPC) systemsAvinash Karanth Kodi, Ahmed Louri. 6 [doi]
• Evaluating network information models on resource efficiency and application performance in lambda-gridsNut Taesombut, Andrew A. Chien. 7 [doi]
• Using MPI file caching to improve parallel write performance for large-scale scientific applicationsWei-keng Liao, Avery Ching, Kenin Coloma, Arifa Nisar, Alok N. Choudhary, Jacqueline Chen, Ramanan Sankaran, Scott Klasky. 8 [doi]
• Virtual machine aware communication libraries for high performance computingWei Huang, Matthew J. Koop, Qi Gao, Dhabaleswar K. Panda. 9 [doi]
• Investigation of leading HPC I/O performance using a scientific-application derived benchmarkJulian Borrill, Leonid Oliker, John Shalf, Hongzhang Shan. 10 [doi]
• Automatic resource specification generation for resource selectionRichard Y. Huang, Henri Casanova, Andrew A. Chien. 11 [doi]
• Performance and cost optimization for multiple large-scale grid workflow applicationsRubing Duan, Radu Prodan, Thomas Fahringer. 12 [doi]
• Inter-operating grids through delegated matchmakingAlexandru Iosup, Dick H. J. Epema, Todd Tannenbaum, Matthew Farrellee, Miron Livny. 13 [doi]
• Automatic software interference detection in parallel applicationsVahid Tabatabaee, Jeffrey K. Hollingsworth. 14 [doi]
• DMTracker: finding bugs in large-scale parallel programs by detecting anomaly in data movementsQi Gao, Feng Qin, Dhabaleswar K. Panda. 15 [doi]
• Scalable security for petascale parallel file systemsAndrew W. Leung, Ethan L. Miller, Stephanie Jones. 16 [doi]
• The Cray BlackWidow: a highly scalable vector multiprocessorDennis Abts, Abdulla Bataineh, Steve Scott, Greg Faanes, Jim Schwarzmeier, Eric Lundberg, Tim Johnson, Mike Bye, Gerald Schwoerer. 17 [doi]
• GRAPE-DR: 2-Pflops massively-parallel computer with 512-core, 512-Gflops processor chips for scientific computingJunichiro Makino, Kei Hiraki, Mary Inaba. 18 [doi]
• A case for low-complexity MP architecturesHåkan Zeffer, Erik Hagersten. 19 [doi]
• Variable latency caches for nanoscale processorSerkan Ozdemir, Arindam Mallik, Ja Chun Ku, Gokhan Memik, Yehea I. Ismail. 20 [doi]
• Data access history cache and associated data prefetching mechanismsYong Chen, Surendra Byna, Xian-He Sun. 21 [doi]
• Scaling performance of interior-point method on large-scale chip multiprocessor systemMikhail Smelyanskiy, Victor W. Lee, Daehyun Kim, Anthony D. Nguyen, Pradeep Dubey. 22 [doi]
• Data exploration of turbulence simulations using a database clusterEric A. Perlman, Randal C. Burns, Yi Li, Charles Meneveau. 23 [doi]
• Parallel hierarchical visualization of large time-varying 3D vector fieldsHongfeng Yu, Chaoli Wang, Kwan-Liu Ma. 24 [doi]
• Low-constant parallel algorithms for finite element simulations using linear octreesHari Sundar, Rahul S. Sampath, Santi S. Adavani, Christos Davatzikos, George Biros. 25 [doi]
• Noncontiguous locking techniques for parallel file systemsAvery Ching, Wei-keng Liao, Alok N. Choudhary, Robert B. Ross, Lee Ward. 26 [doi]
• Integrating parallel file systems with object-based storage devicesAnanth Devulapalli, Dennis Dalessandro, Pete Wyckoff, Nawab Ali, P. Sadayappan. 27 [doi]
• Evaluation of active storage strategies for the lustre parallel file systemJuan Piernas, Jarek Nieplocha, Evan J. Felix. 28 [doi]
• The ghost in the machine: observing the effects of kernel operation on parallel application performanceAroon Nataraj, Alan Morris, Allen D. Malony, Matthew J. Sottile, Peter H. Beckman. 29 [doi]
• P:::::::N:::::::MPI tools: a whole lot greater than the sum of their partsMartin Schulz, Bronis R. de Supinski. 30 [doi]
• Multi-threading and one-sided communication in parallel LU factorizationParry Husbands, Katherine A. Yelick. 31 [doi]
• Workstation capacity tuning using reinforcement learningAharon Bar-Hillel, Amir Di-Nur, Liat Ein-Dor, Ran Gilad-Bachrach, Yossi Ittach. 32 [doi]
• Anomaly detection and diagnosis in grid environmentsLingyun Yang, Chuang Liu, Jennifer M. Schopf, Ian T. Foster. 33 [doi]
• User-friendly and reliable grid computing based on imperfect middlewareRob van Nieuwpoort, Thilo Kielmann, Henri E. Bal. 34 [doi]
• Analyzing the impact of supporting out-of-order communication on in-order performance with iWARPPavan Balaji, Wu-chun Feng, Sitha Bhagvat, Dhabaleswar K. Panda, Rajeev Thakur, William Gropp. 35 [doi]
• Evaluating NIC hardware requirements to achieve high message rate PGAS support on multi-core processorsKeith D. Underwood, Michael Levenhagen, Ron Brightwell. 36 [doi]
• High-performance ethernet-based communications for future multi-core processorsMichael S. Schlansker, Nagabhushan Chitlur, Erwin Oertli, Paul M. Stillwell Jr., Linda Rankin, Dennis Bradford, Richard J. Carter, Jayaram Mudigonda, Nathan L. Binkert, Norman P. Jouppi. 37 [doi]
• Optimization of sparse matrix-vector multiplication on emerging multicore platformsSamuel Williams, Leonid Oliker, Richard W. Vuduc, John Shalf, Katherine A. Yelick, James Demmel. 38 [doi]
• Cray XT4: an early evaluation for petascale scientific simulationSadaf R. Alam, Jeffery A. Kuehn, Richard F. Barrett, Jeff M. Larkin, Mark R. Fahey, Ramanan Sankaran, Patrick H. Worley. 39 [doi]
• An adaptive mesh refinement benchmark for modern parallel programming languagesTong Wen, Jimmy Su, Phillip Colella, Katherine A. Yelick, Noel Keen. 40 [doi]
• Exploring event correlation for failure prediction in coalitions of clustersSong Fu, Cheng-Zhong Xu. 41 [doi]
• Advanced data flow support for scientific grid workflow applicationsJun Qin, Thomas Fahringer. 42 [doi]
• Falkon: a Fast and Light-weight tasK executiON frameworkIoan Raicu, Yong Zhao, Catalin Dumitrescu, Ian T. Foster, Michael Wilde. 43 [doi]
• RobuSTore: a distributed storage architecture with robust and high performanceHuaxia Xia, Andrew A. Chien. 44 [doi]
• A user-level secure grid file systemMing Zhao 0002, Renato J. O. Figueiredo. 45 [doi]
• Efficient gather and scatter operations on graphics processorsBingsheng He, Naga K. Govindaraju, Qiong Luo, Burton Smith. 46 [doi]
• A genetic algorithms approach to modeling the performance of memory-bound computationsMustafa M. Tikir, Laura Carrington, Erich Strohmaier, Allan Snavely. 47 [doi]
• Performance under failures of high-end computingMing Wu, Xian-He Sun, Hui Jin. 48 [doi]
• Bounding energy consumption in large-scale MPI programsBarry Rountree, David K. Lowenthal, Shelby Funk, Vincent W. Freeh, Bronis R. de Supinski, Martin Schulz. 49 [doi]
• Application development on hybrid systemsRoger D. Chamberlain, Mark A. Franklin, Eric J. Tyson, Jeremy Buhler, Saurabh Gayen, Patrick Crowley, James H. Buckley. 50 [doi]
• Multi-level tiling: M for the price of oneDaeGon Kim, Lakshminarayanan Renganarayanan, Dave Rostron, Sanjay V. Rajopadhye, Michelle Mills Strout. 51 [doi]
• Implementation and performance analysis of non-blocking collective operations for MPITorsten Hoefler, Andrew Lumsdaine, Wolfgang Rehm. 52 [doi]
• Efficient operating system scheduling for performance-asymmetric multi-core architecturesTong Li, Dan P. Baumberger, David A. Koufaty, Scott Hahn. 53 [doi]
• A job scheduling framework for large computing farmsGabriele Capannini, Ranieri Baraglia, Diego Puppin, Laura Ricci, Marco Pasquali. 54 [doi]
• Optimizing center performance through coordinated data staging, scheduling and recoveryZhe Zhang, Chao Wang, Sudharshan S. Vazhkudai, Xiaosong Ma, Gregory G. Pike, John W. Cobb, Frank Mueller. 55 [doi]
• A 281 Tflops calculation for X-ray protein structure analysis with special-purpose computers MDGRAPE-3Yousuke Ohno, Eiji Nishibori, Tetsu Narumi, Takahiro Koishi, Tahir H. Tahirov, Hideo Ago, Masashi Miyano, Ryutaro Himeno, Toshikazu Ebisuzaki, Makoto Sakata, Makoto Taiji. 56 [doi]
• First-principles calculations of large-scale semiconductor systems on the earth simulatorTakahisa Ohno, Takenori Yamamoto, Tatsunobu Kokubo, Akira Azami, Yuta Sakaguchi, Tsuyoshi Uda, Takahiro Yamasaki, Daisuke Fukata, Junichiro Koga. 57 [doi]
• Extending stability beyond CPU millennium: a micron-scale atomistic simulation of Kelvin-Helmholtz instabilityJames N. Glosli, D. F. Richards, K. J. Caspersen, R. E. Rudd, John A. Gunnels, Frederick H. Streitz. 58 [doi]
• WRF nature runJohn Michalakes, Josh Hacker, Richard Loft, Michael O. McCracken, Allan Snavely, Nicholas J. Wright, Thomas E. Spelce, Brent C. Gorda, Robert Walkup. 59 [doi]