Andrey A. Mironov - researchr alias

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Viewing Publication 1 - 31 from 31

2023

Foreign RNA spike-ins enable accurate allele-specific expression analysis at scaleAsia Mendelevich, Saumya Gupta, Aleksei Pakharev, Athanasios Teodosiadis, Andrey A. Mironov, Alexander A. Gimelbrant. bioinformatics, 39(Supplement-1):431-439, 2023. [doi]

RNA-Chrom: a manually curated analytical database of RNA-chromatin interactomeGrigory Ryabykh, S. V. Kuznetsov, Y. D. Korostelev, A. I. Sigorskikh, A. A. Zharikova, Andrey A. Mironov. biodb, 2023, 2023. [doi]

2021

An extended catalogue of tandem alternative splice sites in human tissue transcriptomesAndrey A. Mironov, Stepan Denisov, Alexander Greß, Olga V. Kalinina, Dmitri D. Pervouchine. ploscb, 17(4), 2021. [doi]

2018

Coloc-stats: a unified web interface to perform colocalization analysis of genomic featuresBoris Simovski, Chakravarthi Kanduri, Sveinung Gundersen, Dmytro Titov, Diana Domanska, Christoph Bock, Lara Bossini-Castillo, Maria Chikina, Alexander Favorov, Ryan M. Layer, Andrey A. Mironov, Aaron R. Quinlan, Nathan C. Sheffield, Gosia Trynka, Geir Kjetil Sandve. nar, 46(Webserver-Issue), 2018. [doi]

2017

StereoGene: rapid estimation of genome-wide correlation of continuous or interval feature dataElena D. Stavrovskaya, Tejasvi Niranjan, Elana J. Fertig, Sarah J. Wheelan, Alexander V. Favorov, Andrey A. Mironov. bioinformatics, 33(20):3158-3165, 2017. [doi]

2014

RNASurface: fast and accurate detection of locally optimal potentially structured RNA segmentsRuslan A. Soldatov, Svetlana V. Vinogradova, Andrey A. Mironov. bioinformatics, 30(4):457-463, 2014. [doi]

2013

Fast assessment of the correlation between coverage-like genomic features and its statistical significanceElena D. Stavrovskaya, Andrey A. Mironov, Alexander V. Favorov. iwbbio 2013: 225-232 [doi]

2012

Exploring Massive, Genome Scale Datasets with the GenometriCorr PackageAlexander V. Favorov, Loris Mularoni, Leslie M. Cope, Yulia A. Medvedeva, Andrey A. Mironov, Vsevolod Makeev, Sarah J. Wheelan. ploscb, 8(5), 2012. [doi]

A Generalized Hidden Markov Model for Prediction of Cis-regulatory Modules in Eukaryote Genomes and Description of Their Internal StructureAnna A. Nilulova, Alexander V. Favorov, Vsevolod Makeev, Andrey A. Mironov. biostec 2012: 34-41

Evidence for Widespread Association of Mammalian Splicing and Conserved Long-Range RNA StructuresDmitri D. Pervouchine, Ekaterina Khrameeva, Marina Pichugina, Olexii Nikolaienko, Mikhail S. Gelfand, Petr Rubtsov, Andrey A. Mironov. recomb 2012: 199 [doi]

Automated Regulon Content Prediction and Estimation of PWM QualityElena D. Stavrovskaya, Andrey A. Mironov, Dmitry A. Rodionov, Inna Dubchak, Pavel S. Novichkov. biostec 2012: 322-325

2010

2009

Evolution of Regulatory Systems in Bacteria (Invited Keynote Talk)Mikhail S. Gelfand, Alexei E. Kazakov, Yuri D. Korostelev, Olga N. Laikova, Andrey A. Mironov, Aleksandra B. Rakhmaninova, Dmitry A. Ravcheev, Dmitry A. Rodionov, Alexei G. Vitreschak. isbra 2009: 1-4 [doi]

2007

RegTransBase - a database of regulatory sequences and interactions in a wide range of prokaryotic genomesAlexei E. Kazakov, Michael J. Cipriano, Pavel S. Novichkov, Simon Minovitsky, Dmitry V. Vinogradov, Adam Arkin, Andrey A. Mironov, Mikhail S. Gelfand, Inna Dubchak. nar, 35(Database-Issue):407-412, 2007. [doi]

2006

Rnakinetics: a Web Server that Models Secondary Structure Kinetics of an Elongating RNALudmila V. Danilova, Dmitri D. Pervouchine, Alexander V. Favorov, Andrey A. Mironov. jbcb, 4(2):589-596, 2006. [doi]

An Overview of the Algorithmic Session of MCCMB 05Gregory Kucherov, Andrey A. Mironov, Mikhail A. Roytberg. jbcb, 4(2), 2006. [doi]

2005

A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal lengthAlexander V. Favorov, Mikhail S. Gelfand, Anna V. Gerasimova, Dmitry A. Ravcheev, Andrey A. Mironov, Vsevolod Makeev. bioinformatics, 21(10):2240-2245, 2005. [doi]

Alternative splicing and protein functionA. D. Neverov, Irena I. Artamonova, Ramil N. Nurtdinov, Dmitrij Frishman, Mikhail S. Gelfand, Andrey A. Mironov. bmcbi, 6:266, 2005. [doi]

2004

SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteinsOlga V. Kalinina, Pavel S. Novichkov, Andrey A. Mironov, Mikhail S. Gelfand, Aleksandra B. Rakhmaninova. nar, 32(Web-Server-Issue):424-428, 2004.

2003

Two genetic algorithms for identification of regulatory signalsElena D. Stavrovskaya, Andrey A. Mironov. isb, 3:5, 2003. [doi]

2002

Exact mapping of prokaryotic gene startsM. V. Baytaluk, Mikhail S. Gelfand, Andrey A. Mironov. bib, 3(2):181-194, 2002.

2001

Pro-Frame: similarity-based gene recognition in eukaryotic DNA sequences with errorsAndrey A. Mironov, Pavel S. Novichkov, Mikhail S. Gelfand. bioinformatics, 17(1):13-15, 2001.

Gene recognition in eukaryotic DNA by comparison of genomic sequencesPavel S. Novichkov, Mikhail S. Gelfand, Andrey A. Mironov. bioinformatics, 17(11):1011-1018, 2001.

2000

Comparative Analysis of Regulatory Patterns in Bacterial GenomesMikhail S. Gelfand, Pavel S. Novichkov, Elena S. Novichkova, Andrey A. Mironov. bib, 1(4):357-371, 2000.

1998

Combining diverse evidence for gene recognition in completely sequenced bacterial genomesDmitrij Frishman, Andrey A. Mironov, Hans-Werner Mewes, Mikhail S. Gelfand. gcb 1998:

SST versus EST in Gene Recognition (Invited Paper)Andrey A. Mironov, Pavel A. Pevzner. spire 1998: 60-64

Algorithms and software for support of gene identification experimentsSing-Hoi Sze, Mikhail A. Roytberg, Mikhail S. Gelfand, Andrey A. Mironov, Tatiana V. Astakhova, Pavel A. Pevzner. bioinformatics, 14(1):14-19, 1998.

1996

Spliced Alignment: A New Approach to Gene RecognitionMikhail S. Gelfand, Andrey A. Mironov, Pavel A. Pevzner. cpm 1996: 141-158

1995

DNASUN: a package of computer programs for the biotechnology laboratoryAndrey A. Mironov, N. N. Alexandrov, N. Yu. Bogodarova, A. Grigorjev, V. F. Lebedev, L. V. Lunovskaya, M. E. Truchan, Pavel A. Pevzner. bioinformatics, 11(3):331-335, 1995.

1990

Mapping DNA by stochastic relaxation: a new approach to fragment sizesA. V. Grigorjev, Andrey A. Mironov. bioinformatics, 6(2):107-111, 1990.

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