Bernie J. Daigle Jr. - researchr alias

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Viewing Publication 1 - 15 from 15

2021

GEOlimma: differential expression analysis and feature selection using pre-existing microarray dataLiangqun Lu, Kevin A. Townsend, Bernie J. Daigle Jr.. bmcbi, 22(1):44, 2021. [doi]

2019

icHET: interactive visualization of cytoplasmic heteroplasmyVinhthuy Phan, Diem-Trang Pham, Caroline Melton, Adam J. Ramsey, Bernie J. Daigle Jr., Jennifer R. Mandel. bioinformatics, 35(21):4411-4412, 2019. [doi]

2017

Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2016: bioinformatics: Burns, TN, USA. April 21-23, 2017Eric C. Rouchka, Julia H. Chariker, David Tieri, Juw Won Park, Shreedharkumar D. Rajurkar, Vikas Singh, Nishchal K. Verma, Yan Cui, Mark L. Farman, Bradford Condon, Neil Moore, Jerzy W. Jaromczyk, Jolanta Jaromczyk, Daniel R. Harris, Patrick Calie, Eun Kyong Shin, Robert L. Davis, Arash Shaban-Nejad, Joshua M. Mitchell, Robert M. Flight, Qing Jun Wang, Richard M. Higashi, Teresa W.-M. Fan, Andrew N. Lane, Hunter N. B. Moseley, Liangqun Lu, Bernie J. Daigle, Xi Chen, Andrey Smelter, Li Chen, Bailey K. Phan, Nathaniel J. Serpico, Ethan G. Toney, Caroline E. Melton, Jennifer R. Mandel, Bernie J. Daigle Jr., Hao Chen, Kazi I. Zaman, Ramin Homayouni, Patrick J. Trainor, Samantha M. Carlisle, Andrew P. DeFilippis, Shesh N. Rai. bmcbi, 18(S-9), September 2017. [doi]

2016

SParSE++: improved event-based stochastic parameter searchMin K. Roh, Bernie J. Daigle Jr.. bmcsb, 10, 2016. [doi]

Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016: Cadiz, KY, USA. 8-10 April 2016Eric C. Rouchka, Julia H. Chariker, Benjamin J. Harrison, Juw Won Park, Xueyuan Cao, Stanley Pounds, Susana C. Raimondi, James R. Downing, Raul C. Ribeiro, Jeffrey Rubnitz, Jatinder Lamba, Bernie J. Daigle Jr., Deborah Burgess, Stephanie Gehrlich, John C. Carmen, Nicholas Johnson, Chandrakanth Emani, Kalpani De Silva, Michael P. Heaton, Theodore S. Kalbfleisch, Teeradache Viangteeravat, Rahul Mudunuri, Oluwaseun Ajayi, Fatih Sen, Eunice Y. Huang, Mohammad Mohebbi, Luaire Florian, Douglas J. Jackson, John F. Naber, Akm Sabbir, Sally R. Ellingson, Yuping Lu, Charles A. Phillips, Michael A. Langston, Rahul Kumar Sevakula, Raghuveer Thirukovalluru, Nishchal K. Verma, Yan Cui, Mohammed Sayed, Jing Wang, Qi Liu, Yu Shyr, Xiaofei Zhang, Naresh Prodduturi, Gavin R. Oliver, Diane Grill, Jie Na, Jeanette Eckel-Passow, Eric W. Klee, Michael M. Goodin, Mark L. Farman, Harrison Inocencio, Chanyong Jang, Jerzy W. Jaromczyk, Neil Moore, Kelly L. Sovacool, Leon Dent, Mike Izban, Sammed N. Mandape, Shruti S. Sakhare, Siddharth Pratap, Dana Marshall, M. Scotty Depriest, James N. MacLeod, Hanady Adam, Ethan Blandford, Joel Campbell, Joshua Castlen, Brittany Dixon, Ginger Gilbert, Aaron Hall, Philip Kreisle, Jessica Lasher, Bethany Oakes, Allison Speer, Maximilian Valentine, Naga Satya Venkateswara Ra Nagisetty, Rony Jose, Robert W. Rooney, David Hains. bmcbi, 17(S-10), August 2016. [doi]

Identification of disease states associated with coagulopathy in traumaYuanyang Zhang, Tie Bo Wu, Bernie J. Daigle Jr., Mitchell Cohen, Linda Petzold. midm, 16:124, 2016. [doi]

2015

Inferring single-cell gene expression mechanisms using stochastic simulationBernie J. Daigle Jr., Mohammad Soltani, Linda R. Petzold, Abhyudai Singh. bioinformatics, 31(9):1428-1435, 2015. [doi]

A Cure Time Model for Joint Prediction of Outcome and Time-to-OutcomeYuanyang Zhang, Bernie J. Daigle Jr., Mitchell Cohen, Linda Petzold. icdm 2015: 1117-1122 [doi]

2013

Core modular blood and brain biomarkers in social defeat mouse model for post traumatic stress disorderRuoting Yang, Bernie J. Daigle Jr., Seid Y. Muhie, Rasha Hammamieh, Marti Jett, Linda R. Petzold, Francis J. Doyle III. bmcsb, 7:80, 2013. [doi]

2012

Accelerated maximum likelihood parameter estimation for stochastic biochemical systemsBernie J. Daigle Jr., Min K. Roh, Linda R. Petzold, Jarad Niemi. bmcbi, 13:68, 2012. [doi]

Core module biomarker identification with network exploration for breast cancer metastasisRuoting Yang, Bernie J. Daigle Jr., Linda R. Petzold, Francis J. Doyle III. bmcbi, 13:12, 2012. [doi]

2010

Independent component analysis: Mining microarray data for fundamental human gene expression modulesJesse M. Engreitz, Bernie J. Daigle Jr., Jonathan J. Marshall, Russ B. Altman. jbi, 43(6):932-944, 2010. [doi]

Using Pre-existing Microarray Datasets to Increase Experimental Power: Application to Insulin ResistanceBernie J. Daigle Jr., Alicia Deng, Tracey McLaughlin, Samuel W. Cushman, Margaret C. Cam, Gerald Reaven, Philip S. Tsao, Russ B. Altman. ploscb, 6(3), 2010. [doi]

2008

M-BISON: Microarray-based integration of data sources using networksBernie J. Daigle Jr., Russ B. Altman. bmcbi, 9, 2008. [doi]

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