Donna K. Slonim - researchr alias

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Viewing Publication 1 - 36 from 36

2022

FiT: fiber-based tensor completion for drug repurposingAysegul Bumin, Anna M. Ritz, Donna K. Slonim, Tamer Kahveci, Kejun Huang. bcb 2022: [doi]

2020

ISMB 2020 proceedingsNadia El-Mabrouk, Donna K. Slonim. bioinformatics, 36(Supplement-1), 2020. [doi]

aTEMPO: Pathway-Specific Temporal Anomalies for Precision TherapeuticsChristopher Michael Pietras, Liam Power, Donna K. Slonim. psb 2020: 683-694 [doi]

2018

Putting benchmarks in their rightful place: The heart of computational biologyBjoern Peters, Steven E. Brenner, Edwin Wang, Donna K. Slonim, Maricel G. Kann. ploscb, 14(11), 2018. [doi]

TEMPO: Detecting Pathway-Specific Temporal Dysregulation of Gene Expression in DiseaseChristopher Michael Pietras, Faith Ocitti, Donna K. Slonim. bcb 2018: 79-88 [doi]

2017

Scalable FRaC Variants: Anomaly Detection for Precision MedicineCyrus Cousins, Chirstopher M. Pietras, Donna K. Slonim. ipps 2017: 253-262 [doi]

Towards a more molecular taxonomy of diseaseJisoo Park, Benjamin J. Hescott, Donna K. Slonim. biomedsem, 8(1), 2017. [doi]

Building a Molecular Taxonomy of DiseaseJisoo Park, Benjamin J. Hescott, Donna K. Slonim. bcb 2017: 626 [doi]

2015

Guest Editors' Introduction: Selected Papers from ACM-BCB 2013Srinivas Aluru, Donna K. Slonim. tcbb, 12(1):2-3, 2015. [doi]

CSAX: Characterizing Systematic Anomalies in eXpression DataKeith Noto, Saeed Majidi, Andrea G. Edlow, Heather C. Wick, Diana W. Bianchi, Donna K. Slonim. jcb, 22(5):402-413, 2015. [doi]

2014

2012

FRaC: a feature-modeling approach for semi-supervised and unsupervised anomaly detectionKeith Noto, Carla E. Brodley, Donna K. Slonim. datamine, 25(1):109-133, 2012. [doi]

2011

Connectedness of PPI network neighborhoods identifies regulatory hub proteinsAndrew D. Fox, Benjamin J. Hescott, Anselm Blumer, Donna K. Slonim. bioinformatics, 27(8):1135-1142, 2011. [doi]

Mining Functionally Relevant Gene Sets for Analyzing Physiologically Novel Clinical Expression DataSevin Turcan, Xintao Wei, Jill Maron, Douglas E. Vetter, Donna K. Slonim. psb 2011: 50-61 [doi]

2010

2009

High Throughput Interaction Data Reveals Degree Conservation of Hub ProteinsA. Fox, D. Taylor, Donna K. Slonim. psb 2009: 391-402 [doi]

Evaluating Between-Pathway Models with Expression DataBenjamin J. Hescott, Mark D. M. Leiserson, Lenore Cowen, Donna K. Slonim. recomb 2009: 372-385 [doi]

Getting Started in Gene Expression Microarray AnalysisDonna K. Slonim, Itai Yanai. ploscb, 5(10), 2009. [doi]

2008

Mining Protein-Protein Interactions from GeneRIFs with OpenDMAPAndrew D. Fox, William A. Baumgartner Jr., Helen L. Johnson, Lawrence E. Hunter, Donna K. Slonim. ismb 2010: 43-52 [doi]

A Distance-Based Method for Detecting Horizontal Gene Transfer in Whole GenomesXintao Wei, Lenore Cowen, Carla E. Brodley, Arthur Brady, D. Sculley, Donna K. Slonim. isbra 2008: 26-37 [doi]

2006

Motif Evaluation by Leave-one-out ScoringAudrey Girouard, Noah W. Smith, Donna K. Slonim. cibcb 2006: 1-7 [doi]

2000

Class prediction and discovery using gene expression dataDonna K. Slonim, Pablo Tamayo, Jill P. Mesirov, Todd R. Golub, Eric S. Lander. recomb 2000: 263-272 [doi]

1999

Computational biologyJill P. Mesirov, Donna K. Slonim. cse, 1(3):16-17, 1999. [doi]

1998

Learning with Unreliable Boundary QueriesAvrim Blum, Prasad Chalasani, Sally A. Goldman, Donna K. Slonim. jcss, 56(2):209-222, 1998.

1997

Building human genome maps with radiation hybridsDonna K. Slonim, Leonid Kruglyak, Lincoln Stein, Eric S. Lander. recomb 1997: 277-286 [doi]

Building Human Genome Maps with Radiation HybridsDonna K. Slonim, Leonid Kruglyak, Lincoln Stein, Eric S. Lander. jcb, 4(4):487-504, 1997.

1996

Learning from imperfect data in theory and practiceDonna K. Slonim. PhD thesis, Massachusetts Institute of Technology, Cambridge, MA, USA, 1996. [doi]

1995

Learning with Unreliable Boundary QueriesAvrim Blum, Prasad Chalasani, Sally A. Goldman, Donna K. Slonim. colt 1995: 98-107 [doi]

1994

Randomly Fallible Teachers: Learning Monotone DNF with an Incomplete Membership OracleDana Angluin, Donna K. Slonim. ml, 14(1):7-26, 1994.

The Power of Team Exploration: Two Robots Can Learn Unlabeled Directed GraphsMichael A. Bender, Donna K. Slonim. focs 1994: 75-85

1991

Learning Monotone DNF with an Incomplete Membership OracleDana Angluin, Donna K. Slonim. colt 1991: 139-146 [doi]

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