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Viewing Publication 1 - 96 from 96

2020

SmartPhase: Accurate and fast phasing of heterozygous variant pairs for genetic diagnosis of rare diseasesPaul Hager, Hans-Werner Mewes, Meino Rohlfs, Christoph Klein, Tim Jeske. ploscb, 16(2), 2020. [doi]

2014

EXPANDS: expanding ploidy and allele frequency on nested subpopulationsNoemi Andor, Julie V. Harness, Sabine Müller, Hans-Werner Mewes, Claudia Petritsch. bioinformatics, 30(1):50-60, 2014. [doi]

SIMAP - the database of all-against-all protein sequence similarities and annotations with new interfaces and increased coverageRoland Arnold, Florian Goldenberg, Hans-Werner Mewes, Thomas Rattei. nar, 42(Database-Issue):279-284, 2014. [doi]

2011

2010

2009

GeneSet2miRNA: finding the signature of cooperative miRNA activities in the gene listsAlexey V. Antonov, Sabine Dietmann, Philip Wong, Dominik Lutter, Hans-Werner Mewes. nar, 37(Web-Server-Issue):323-328, 2009. [doi]

The DICS repository: module-assisted analysis of disease-related gene listsSabine Dietmann, Elisabeth Georgii, Alexey V. Antonov, Koji Tsuda, Hans-Werner Mewes. bioinformatics, 25(6):830-831, 2009. [doi]

CRONOS: the cross-reference navigation serverBrigitte Waegele, Irmtraud Dunger-Kaltenbach, Gisela Fobo, Corinna Montrone, Hans-Werner Mewes, Andreas Ruepp. bioinformatics, 25(1):141-143, 2009. [doi]

PEDANT covers all complete RefSeq genomesMathias C. Walter, Thomas Rattei, Roland Arnold, Ulrich GÃ¼ldener, Martin MÃ¼nsterkÃ¶tter, Karamfilka Nenova, Gabi KastenmÃ¼ller, Patrick Tischler, Andreas WÃ¶lling, Andreas Volz, Norbert Pongratz, Ralf Jost, Hans-Werner Mewes, Dmitrij Frishman. nar, 37(Database-Issue):408-411, 2009. [doi]

2008

Consecutive KEGG Pathway Models for the Interpretation of High-throughput Genomics DataAlexey V. Antonov, Sabine Dietmann, Hans-Werner Mewes. gcb 2008: 1-9

Complex phylogenetic profiling reveals fundamental genotype-phenotype associationsAlexey V. Antonov, Hans-Werner Mewes. CANDC, 32(6):412-416, 2008. [doi]

ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput dataAlexey V. Antonov, Thorsten Schmidt, Yu Wang, Hans-Werner Mewes. nar, 36(Web-Server-Issue):347-351, 2008. [doi]

An environmental perspective on large-scale genome clustering based on metabolic capabilitiesGabi Kastenmüller, Johann Gasteiger, Hans-Werner Mewes. eccb 2008: 56-62 [doi]

MIPS: analysis and annotation of genome information in 2007Hans-Werner Mewes, Sabine Dietmann, Dmitrij Frishman, Richard Gregory, Gertrud Mannhaupt, Klaus F. X. Mayer, Martin Münsterkötter, Andreas Ruepp, Manuel Spannagl, Volker Stümpflen, Thomas Rattei. nar, 36(Database-Issue):196-201, 2008. [doi]

SIMAP - structuring the network of protein similaritiesThomas Rattei, Patrick Tischler, Roland Arnold, Franz Hamberger, Jörg Krebs, Jan Krumsiek, Benedikt Wachinger, Volker Stümpflen, Hans-Werner Mewes. nar, 36(Database-Issue):289-292, 2008. [doi]

CORUM: the comprehensive resource of mammalian protein complexesAndreas Ruepp, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Goar Frishman, Corinna Montrone, Michael Stransky, Brigitte Waegele, Thorsten Schmidt, Octave Noubibou Doudieu, Volker Stümpflen, Hans-Werner Mewes. nar, 36(Database-Issue):646-650, 2008. [doi]

FunCat functional inference with belief propagation and feature integrationDimitrij Surmeli, Oliver Ratmann, Hans-Werner Mewes, Igor V. Tetko. CANDC, 32(5):375-377, 2008. [doi]

Beyond the best match: machine learning annotation of protein sequences by integration of different sources of informationIgor V. Tetko, Igor V. Rodchenkov, Mathias C. Walter, Thomas Rattei, Hans-Werner Mewes. bioinformatics, 24(5):621-628, 2008. [doi]

OREST: the online resource for EST analysisBrigitte Waegele, Thorsten Schmidt, Hans-Werner Mewes, Andreas Ruepp. nar, 36(Web-Server-Issue):140-144, 2008. [doi]

2007

2006

MPact: the MIPS protein interaction resource on yeastUlrich Güldener, Martin Münsterkötter, Matthias Oesterheld, Philipp Pagel, Andreas Ruepp, Hans-Werner Mewes, Volker Stümpflen. nar, 34(Database-Issue):436-441, 2006. [doi]

FGDB: a comprehensive fungal genome resource on the plant pathogen ::::Fusarium graminearum::::Ulrich Güldener, Gertrud Mannhaupt, Martin Münsterkötter, Dirk Haase, Matthias Oesterheld, Volker Stümpflen, Hans-Werner Mewes, Gerhard Adam. nar, 34(Database-Issue):456-458, 2006. [doi]

MIPS: analysis and annotation of proteins from whole genomes in 2005Hans-Werner Mewes, Dmitrij Frishman, Klaus F. X. Mayer, Martin Münsterkötter, Octave Noubibou, Philipp Pagel, Thomas Rattei, Matthias Oesterheld, Andreas Ruepp, Volker Stümpflen. nar, 34(Database-Issue):169-172, 2006. [doi]

Using Public Resource Computing and Systematic Pre-calculation for Large Scale Sequence AnalysisThomas Rattei, Mathias C. Walter, Roland Arnold, David P. Anderson, Hans-Werner Mewes. gccb 2007: 11-18 [doi]

SIMAP: the similarity matrix of proteinsThomas Rattei, Roland Arnold, Patrick Tischler, Dominik Lindner, Volker Stümpflen, Hans-Werner Mewes. nar, 34(Database-Issue):252-256, 2006. [doi]

Arabidopsis thalianaIgor V. Tetko, Georg Haberer, Stephen Rudd, Blake C. Meyers, Hans-Werner Mewes, Klaus F. X. Mayer. ploscb, 2(6), 2006. [doi]

Arabidopsis thalianaIgor V. Tetko, Georg Haberer, Stephen Rudd, Blake C. Meyers, Hans-Werner Mewes, Klaus F. X. Mayer. ploscb, 2(3), 2006. [doi]

2005

Exploiting scale-free information from expression data for cancer classificationAlexey V. Antonov, Igor V. Tetko, Denis Kosykh, Dimitrij Surmeli, Hans-Werner Mewes. CANDC, 29(4):288-293, 2005. [doi]

Exploiting scale-free information from expression data for cancer classificationAlexey V. Antonov, Igor V. Tetko, Denis Kosykh, Dimitrij Surmeli, Hans-Werner Mewes. gcb 2005: 93-102

SIMAP - The similarity matrix of proteinsRoland Arnold, Thomas Rattei, Patrick Tischler, Minh-Duc Truong, Volker Stümpflen, Hans-Werner Mewes. eccb 2005: 46 [doi]

Support vector machines for separation of mixed plant?Cpathogen EST collections based on codon usageCaroline C. Friedel, Katharina H. V. Jahn, Selina Sommer, Stephen Rudd, Hans-Werner Mewes, Igor V. Tetko. bioinformatics, 21(8):1383-1388, 2005. [doi]

The MIPS mammalian protein?Cprotein interaction databasePhilipp Pagel, Stefan Kovac, Matthias Oesterheld, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Goar Frishman, Corinna Montrone, Pekka Mark, Volker Stümpflen, Hans-Werner Mewes, Andreas Ruepp, Dmitrij Frishman. bioinformatics, 21(6):832-834, 2005. [doi]

The PEDANT genome database in 2005M. Louise Riley, Thorsten Schmidt, Christian Wagner, Hans-Werner Mewes, Dmitrij Frishman. nar, 33(Database-Issue):308-310, 2005. [doi]

MIPS bacterial genomes functional annotation benchmark datasetIgor V. Tetko, Barbara Brauner, Irmtraud Dunger-Kaltenbach, Goar Frishman, Corinna Montrone, Gisela Fobo, Andreas Ruepp, Alexey V. Antonov, Dimitrij Surmeli, Hans-Werner Mewes. bioinformatics, 21(10):2520-2521, 2005. [doi]

Super paramagnetic clustering of protein sequencesIgor V. Tetko, Axel Facius, Andreas Ruepp, Hans-Werner Mewes. bmcbi, 6:82, 2005. [doi]

Gene selection from microarray data for cancer classification - a machine learning approachYu Wang, Igor V. Tetko, Mark A. Hall, Eibe Frank, Axel Facius, Klaus F. X. Mayer, Hans-Werner Mewes. CANDC, 29(1):37-46, 2005. [doi]

2004

Optimization models for cancer classification: extracting gene interaction information from microarray expression dataAlexey V. Antonov, Igor V. Tetko, Michael T. Mader, Jan Budczies, Hans-Werner Mewes. bioinformatics, 20(5):644-652, 2004. [doi]

A web portal for classification of expression data using maximal margin linear programmingAlexey V. Antonov, Igor V. Tetko, Volodymyr V. Prokopenko, Denis Kosykh, Hans-Werner Mewes. bioinformatics, 20(17):3284-3285, 2004. [doi]

The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resourcesTorsten Crass, Iris Antes, Rico Basekow, Peer Bork, Christian Buning, Maik Christensen, Holger Claussen, Christian Ebeling, Peter Ernst, Valérie Gailus-Durner, Karl-Heinz Glatting, Rolf Gohla, Frank Gößling, Korbinian Grote, Karsten R. Heidtke, Alexander Herrmann, Sean O Keeffe, O. Kießlich, Sven Kolibal, Jan O. Korbel, Thomas Lengauer, Ines Liebich, Mark van der Linden, Hannes Luz, Kathrin Meissner, Christian von Mering, Heinz-Theodor Mevissen, Hans-Werner Mewes, Holger Michael, Martin Mokrejs, Tobias Müller, Heike Pospisil, Matthias Rarey, Jens G. Reich, Ralf Schneider, Dietmar Schomburg, Steffen Schulze-Kremer, Knut Schwarzer, Ingolf Sommer, Stephan Springstubbe, Sándor Suhai, Gnanasekaran Thoppae, Martin Vingron, Jens Warfsmann, Thomas Werner, Daniel Wetzler, Edgar Wingender, Ralf Zimmer. bioinformatics, 20(2):268-270, 2004. [doi]

The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resourcesTorsten Crass, Iris Antes, Rico Basekow, Peer Bork, Christian Buning, Maik Christensen, Holger Claussen, Christian Ebeling, Peter Ernst, Valérie Gailus-Durner, Karl-Heinz Glatting, Rolf Gohla, Frank Gößling, Korbinian Grote, Karsten R. Heidtke, Alexander Herrmann, Sean O'Keeffe, O. Kießlich, Sven Kolibal, Jan O. Korbel, Thomas Lengauer, Ines Liebich, Mark van der Linden, Hannes Luz, Kathrin Meissner, Christian von Mering, Heinz-Theodor Mevissen, Hans-Werner Mewes, Holger Michael, Martin Mokrejs, Tobias Müller, Heike Pospisil, Matthias Rarey, Jens G. Reich, Ralf Schneider, Dietmar Schomburg, Steffen Schulze-Kremer, Knut Schwarzer, Ingolf Sommer, Stephan Springstubbe, Sándor Suhai, Gnanasekaran Thoppae, Martin Vingron, Jens Warfsmann, Thomas Werner, Daniel Wetzler, Edgar Wingender, Ralf Zimmer. bioinformatics, 20(2):268-270, 2004. [doi]

German Conference on Bioinformatics 2003 (GCB 03)Hans-Werner Mewes. bioinformatics, 20(10):1481, 2004. [doi]

MIPS: analysis and annotation of proteins from whole genomesHans-Werner Mewes, C. Amid, Roland Arnold, Dmitrij Frishman, Ulrich Güldener, Gertrud Mannhaupt, Martin Münsterkötter, Philipp Pagel, Normann Strack, Volker Stümpflen, Jens Warfsmann, Andreas Ruepp. nar, 32(Database-Issue):41-44, 2004.

MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource for plant genomicsHeiko Schoof, Rebecca Ernst, Vladimir Nazarov, Lukas Pfeifer, Hans-Werner Mewes, Klaus F. X. Mayer. nar, 32(Database-Issue):373-376, 2004.

2003

2002

SNAPper: gene order predicts gene functionGrigory Kolesov, Hans-Werner Mewes, Dmitrij Frishman. bioinformatics, 18(7):1017-1019, 2002.

MIPS: a database for genomes and protein sequencesHans-Werner Mewes, Dmitrij Frishman, Ulrich Güldener, Gertrud Mannhaupt, Klaus F. X. Mayer, Martin Mokrejs, Burkhard Morgenstern, Martin Münsterkötter, Stephen Rudd, B. Weil. nar, 30(1):31-34, 2002.

Exon discovery by genomic sequence alignmentBurkhard Morgenstern, Oliver Rinner, Saïd Abdeddaïm, Dirk Haase, Klaus F. X. Mayer, Andreas W. M. Dress, Hans-Werner Mewes. bioinformatics, 18(6):777-787, 2002.

MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genomeHeiko Schoof, Paolo Zaccaria, Heidrun Gundlach, Kai Lemcke, Stephen Rudd, Grigory Kolesov, Roland Arnold, Hans-Werner Mewes, Klaus F. X. Mayer. nar, 30(1):91-93, 2002.

The Protein Information Resource: an integrated public resource of functional annotation of proteinsCathy H. Wu, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Robert S. Ledley, Kali C. Lewis, Hans-Werner Mewes, Bruce C. Orcutt, Baris E. Suzek, Akira Tsugita, C. R. Vinayaka, Lai-Su L. Yeh, Jian Zhang, Winona C. Barker. nar, 30(1):35-37, 2002.

2001

2000

The Protein Information Resource (PIR)Winona C. Barker, John S. Garavelli, Hongzhan Huang, Peter B. McGarvey, Bruce C. Orcutt, Geetha Y. Srinivasarao, Chunlin Xiao, Lai-Su L. Yeh, Robert S. Ledley, Joseph F. Janda, Friedhelm Pfeiffer, Hans-Werner Mewes, Akira Tsugita, Cathy H. Wu. nar, 28(1):41-44, 2000.

Integrative Analysis of Protein Interaction DataMatthias Fellenberg, Kaj Albermann, Alfred Zollner, Hans-Werner Mewes, Jean Hani. ismb 2000: 152-161

MIPS: a database for genomes and protein sequencesHans-Werner Mewes, Dmitrij Frishman, Christian Gruber, Birgitta Geier, Dirk Haase, Andreas Kaps, Kai Lemcke, Gertrud Mannhaupt, Friedhelm Pfeiffer, Christine M. Schüller, S. Stocker, B. Weil. nar, 28(1):37-40, 2000.

MITOP, the mitochondrial proteome database: 2000 updateC. Scharfe, Paolo Zaccaria, K. Hörtnagel, M. Jaksch, T. Klopstock, M. Dembowski, R. Lill, H. Prokisch, K. D. Gerbitz, W. Neupert, Hans-Werner Mewes, Thomas Meitinger. nar, 28(1):155-158, 2000.

1999

The PIR-International Protein Sequence DatabaseWinona C. Barker, John S. Garavelli, Peter B. McGarvey, Christopher R. Marzec, Bruce C. Orcutt, Geetha Y. Srinivasarao, Lai-Su L. Yeh, Robert S. Ledley, Hans-Werner Mewes, Friedhelm Pfeiffer, Akira Tsugita, Cathy H. Wu. nar, 27(1):39-43, 1999.

A generic system for the management of sequence annotationsOle Bents, Hans-Werner Mewes. gcb 1999: 179-180

Interpreting Clusters of Gene Expression Profiles in Terms of Metabolic PathwaysMatthias Fellenberg, Hans-Werner Mewes. gcb 1999: 185-187

An Object-Oriented Data Model for the Dynamic Modelling of Metabolic PathwaysGabi Kastenmüller, Hans-Werner Mewes. gcb 1999: 206-207

MIPS: a database for genomes and protein sequencesHans-Werner Mewes, Klaus Heumann, Andreas Kaps, Klaus F. X. Mayer, Friedhelm Pfeiffer, S. Stocker, Dmitrij Frishman. nar, 27(1):44-48, 1999.

MITOP: database for mitochondria-related proteins, genes and diseasesC. Scharfe, Paolo Zaccaria, K. Hörtnagel, M. Jaksch, T. Klopstock, R. Lill, H. Prokisch, K. D. Gerbitz, Hans-Werner Mewes, Thomas Meitinger. nar, 27(1):153-155, 1999.

SESAM: Seed Extraction Sequence Analysis MethodNormann Strack, Hans-Werner Mewes. gcb 1999: 59-65

Homology based gene prediction in Arabidopsis thalianaPaolo Zaccaria, Hans-Werner Mewes. gcb 1999: 230-231

1998

The MIPS Yeast Genome DatabaseKaj Albermann, Jean Hani, S. Stocker, Alfred Zollner, Hans-Werner Mewes. gcb 1998:

The PIR-International Protein Sequence DatabaseWinona C. Barker, John S. Garavelli, Daniel H. Haft, Lois T. Hunt, Christopher R. Marzec, Bruce C. Orcutt, Geetha Y. Srinivasarao, Lai-Su L. Yeh, Robert S. Ledley, Hans-Werner Mewes, Friedhelm Pfeiffer, Akira Tsugita. nar, 26(1):27-32, 1998.

Comprehensive, comprehensible, distributed and intelligent databases: current statusDmitrij Frishman, Klaus Heumann, A. Lesk, Hans-Werner Mewes. bioinformatics, 14(7):551-561, 1998.

Combining diverse evidence for gene recognition in completely sequenced bacterial genomesDmitrij Frishman, Andrey A. Mironov, Hans-Werner Mewes, Mikhail S. Gelfand. gcb 1998:

Developing a groupware system for annotating Protein Sequences Using Object Oriented TechnologyAndreas Kaps, Dirk Haase, Hans-Werner Mewes. gcb 1998:

MIPS: a database for protein sequences and complete genomesHans-Werner Mewes, Jean Hani, Friedhelm Pfeiffer, Dmitrij Frishman. nar, 26(1):33-37, 1998.

An Object Oriented Approach to Data Handling and Semiautomatic Processing of cDNA ClonesNormann Strack, Hans-Werner Mewes. gcb 1998:

1997

1996

The PIR-International Protein Sequence DatabaseDavid G. George, Winona C. Barker, Hans-Werner Mewes, Friedhelm Pfeiffer, Akira Tsugita. nar, 24(1):17-20, 1996.

A Theoretical Model of Genome RedundancyKlaus Heumann, Hans-Werner Mewes. gcb 1997: 221-223

A Top-Down Approach to Whole Genome VisualizationKlaus Heumann, C. Harris, Hans-Werner Mewes. ismb 1996: 98-108

Visualization and Analysis of the Complete Yeast GenomeAndreas Kaps, Klaus Heumann, Dmitrij Frishman, M. Bähr, Hans-Werner Mewes. gcb 1997: 178-188

Genomanalyse und WWW: Vom Klon zum KlickAndreas Kaps, Klaus Heumann, Andreas Maierl, Hans-Werner Mewes. it, 38(5):8-15, 1996. [doi]

The Complete Sequence of the Yeast GenomeHans-Werner Mewes, A. Gleissner, M. Bähr, Klaus Heumann. gcb 1997: 110-112

Yeast Genome Sequence Data on DisplayHans-Werner Mewes, A. Gleissner, M. Bähr, Klaus Heumann. gcb 1997: 275

1995

Genome Analysis: Pattern Search in Biological MacromoleculesHans-Werner Mewes, Klaus Heumann. cpm 1995: 261-285

1994

A new concept of sequence data distribution on wide area networksKlaus Heumann, David G. George, Hans-Werner Mewes. bioinformatics, 10(5):519-526, 1994.

1993

The PIR-International databasesWinona C. Barker, David G. George, Hans-Werner Mewes, Friedhelm Pfeiffer, Akira Tsugita. nar, 21(13):3089-3092, 1993.

1989

Schnelle Identifizierung von Peptiden durch sensitive Bestimmung ihrer Aminosäurezusammensetzung und Zugriff auf SequenzdatenbankenHans-Werner Mewes. PhD thesis, University of Marburg, Germany, 1989. [doi]

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