Hiroyuki Kurata - researchr alias

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Viewing Publication 1 - 28 from 28

2024

Stack-DHUpred: Advancing the accuracy of dihydrouridine modification sites detection via stacking approachMd. Harun-Or-Roshid, Kazuhiro Maeda, Le Thi Phan, Balachandran Manavalan, Hiroyuki Kurata. cbm, 169:107848, February 2024. [doi]

2022

2021

IRC-Fuse: improved and robust prediction of redox-sensitive cysteine by fusing of multiple feature representationsMd. Mehedi Hasan 0002, Md. Ashad Alam, Watshara Shoombuatong, Hiroyuki Kurata. jcamd, 35(3):315-323, 2021. [doi]

NeuroPred-FRL: an interpretable prediction model for identifying neuropeptide using feature representation learningMd. Mehedi Hasan 0002, Md. Ashad Alam, Watshara Shoombuatong, Hong-Wen Deng, Balachandran Manavalan, Hiroyuki Kurata. bib, 22(6), 2021. [doi]

Meta-i6mA: an interspecies predictor for identifying DNA N6-methyladenine sites of plant genomes by exploiting informative features in an integrative machine-learning frameworkMd. Mehedi Hasan 0002, Shaherin Basith, Mst. Shamima Khatun, Gwang Lee, Balachandran Manavalan, Hiroyuki Kurata. bib, 22(3), 2021. [doi]

Fabrication and Characterisation of Organic EL Devices in the Presence of Cyclodextrin as an InterlayerMichihiro Hara, Takao Umeda, Hiroyuki Kurata. sensors, 21(11):3666, 2021. [doi]

LSTM-PHV: prediction of human-virus protein-protein interactions by LSTM with word2vecSho Tsukiyama, Md. Mehedi Hasan 0002, Satoshi Fujii, Hiroyuki Kurata. bib, 22(6), 2021. [doi]

2020

iLBE for Computational Identification of Linear B-cell Epitopes by Integrating Sequence and Evolutionary FeaturesMd. Mehedi Hasan 0002, Mst. Shamima Khatun, Hiroyuki Kurata. gpb, 18(5):593-600, 2020. [doi]

ProIn-Fuse: improved and robust prediction of proinflammatory peptides by fusing of multiple feature representationsMst. Shamima Khatun, Md. Mehedi Hasan 0002, Watshara Shoombuatong, Hiroyuki Kurata. jcamd, 34(12):1229-1236, 2020. [doi]

2019

Improvement of the memory function of a mutual repression network in a stochastic environment by negative autoregulationA. B. M. Shamim Ul Hasan, Hiroyuki Kurata, Sebastian Pechmann. bmcbi, 20(1):734, 2019. [doi]

2018

iLMS, Computational Identification of Lysine-Malonylation Sites by Combining Multiple Sequence FeaturesMd. Mehedi Hasan, Hiroyuki Kurata. bibe 2018: 356-359 [doi]

SIPMA: A Systematic Identification of Protein-Protein Interactions in Zea mays Using Autocorrelation Features in a Machine-Learning FrameworkMst. Shamima Khatun, Md. Mehedi Hasan, Md. Nurul Haque Mollah, Hiroyuki Kurata. bibe 2018: 122-125 [doi]

2014

BioFNet: biological functional network database for analysis and synthesis of biological systemsHiroyuki Kurata, Kazuhiro Maeda, Toshikazu Onaka, Takenori Takata. bib, 15(5):699-709, 2014. [doi]

Analytical study of robustness of a negative feedback oscillator by multiparameter sensitivityKazuhiro Maeda, Hiroyuki Kurata. bmcsb, 8(S-5), 2014. [doi]

2013

Multi-Dimensional Shift Multiplexing Technique with Spherical Reference WavesShuhei Yoshida, Takaaki Matsubara, Hiroyuki Kurata, Shuma Horiuchi, Manabu Yamamoto. ieicet, 96-C(12):1520-1524, 2013. [doi]

2012

CADLIVE optimizer: web-based parameter estimation for dynamic modelsKentaro Inoue, Kazuhiro Maeda, Yuki Kato, Shinpei Tonami, Shogo Takagi, Hiroyuki Kurata. scfbm, 7:9, 2012. [doi]

E. coli Ammonia Assimilation SystemKoichi Masaki, Kazuhiro Maeda, Hiroyuki Kurata. alife, 18(1):53-90, 2012. [doi]

2009

Genetic modification of flux for flux prediction of mutantsQuanyu Zhao, Hiroyuki Kurata. bioinformatics, 25(13):1702-1708, 2009. [doi]

2007

Integration of enzyme activities into metabolic flux distributions by elementary mode analysisHiroyuki Kurata, Quanyu Zhao, Ryuichi Okuda, Kazuyuki Shimizu. bmcsb, 1:31, 2007. [doi]

2006

Module-Based Analysis of Robustness Tradeoffs in the Heat Shock Response SystemHiroyuki Kurata, Hana El-Samad, Rei Iwasaki, Hisao Ohtake, John C. Doyle, Irina Grigorova, Carol A. Gross, Mustafa Khammash. ploscb, 2(7), 2006. [doi]

Effective and Fast Optimization for a Dynamic Model of the Drosophila Circadian OscillatorTanaka Shin, Hiroyuki Kurata, Takeshi Ohashi. SMC 2006: 3596-3601 [doi]

2005

A grid layout algorithm for automatic drawing of biochemical networksWeijiang Li, Hiroyuki Kurata. bioinformatics, 21(9):2036-2042, 2005. [doi]

Reverse Engineering for a Dynamic Model of the Drosophila Circadia OscillatorTanaka Shin, Hiroyuki Kurata, Takeshi Ohashi. cimca 2005: 625-631

Survival ratio GA for two-evaluation problem in parameter tuning of heat shock response in E. coliTanaka Shin, Hiroyuki Kurata, Takeshi Ohashi. SMC 2005: 2078-2083 [doi]

2002

Robustness analysis of the heat shock response in E. coliHana El-Samad, Mustafa Khammash, Hiroyuki Kurata, John Doyle. amcc 2002: 1742-1747 [doi]

2001

Feedback regulation of the heat shock response in E. coliHiroyuki Kurata, Hana El-Samad, Tau-Mu Yi, Mustafa Khammash, John Doyle. cdc 2001: 837-842 [doi]

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