Irene Otero-Muras - researchr alias

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Viewing Publication 1 - 16 from 16

2023

IDESS: a toolbox for identification and automated design of stochastic gene circuitsCarlos Sequeiros, Manuel Pájaro, Carlos Vázquez 0002, Julio R. Banga, Irene Otero-Muras. bioinformatics, 39(10), October 2023. [doi]

Global Optimization Approach for Parameter Estimation in Stochastic Dynamic Models of BiosystemsCarlos Sequeiros, Irene Otero-Muras, Carlos Vázquez 0002, Julio R. Banga. tcbb, 20(3):1971-1982, 2023. [doi]

2022

A numerical approach for detecting switch-like bistability in mass action chemical reaction networks with conservation lawsBrandon Reyes, Irene Otero-Muras, Vladislav A. Petyuk. bmcbi, 23(1):1, 2022. [doi]

2020

CRNT4SBML: a Python package for the detection of bistability in biochemical reaction networksBrandon Reyes, Irene Otero-Muras, Michael T. Shuen, Alexandre M. Tartakovsky, Vladislav A. Petyuk. bioinformatics, 36(12):3922-3924, 2020. [doi]

BioSwitch: a tool for the detection of bistability and multi-steady state behaviour in signalling and gene regulatory networksPencho Yordanov, Jörg Stelling, Irene Otero-Muras. bioinformatics, 36(5):1640-1641, 2020. [doi]

2018

Routes to Multiple Equilibria for Mass-Action Kinetic SystemsAntonio A. Alonso, Irene Otero-Muras, Manuel Pájaro. complexity, 2018, 2018. [doi]

SELANSI: a toolbox for simulation of stochastic gene regulatory networksManuel Pájaro, Irene Otero-Muras, Carlos Vázquez, Antonio A. Alonso. bioinformatics, 34(5):893-895, 2018. [doi]

2017

Chemical Reaction Network Theory elucidates sources of multistability in interferon signalingIrene Otero-Muras, Pencho Yordanov, Jörg Stelling. ploscb, 13(4), 2017. [doi]

2016

SYNBADm: a tool for optimization-based automated design of synthetic gene circuitsIrene Otero-Muras, David Henriques, Julio R. Banga. bioinformatics, 32(21):3360-3362, 2016. [doi]

2014

A method for inverse bifurcation of biochemical switches: inferring parameters from dose response curvesIrene Otero-Muras, Pencho Yordanov, Jörg Stelling. bmcsb, 8:114, 2014. [doi]

Multicriteria global optimization for biocircuit designIrene Otero-Muras, Julio R. Banga. bmcsb, 8:113, 2014. [doi]

Optimization Based Design of Synthetic Oscillators from Standard Biological PartsIrene Otero-Muras, Julio R. Banga. cmsb 2014: 225-238 [doi]

2010

Dynamic multi-compartmental modelling of metal bioaccumulation in fish: Identifiability implicationsIrene Otero-Muras, A. Franco-UrÃa, Antonio A. Alonso, Eva Balsa-Canto. envsoft, 25(3):344-353, 2010. [doi]

2008

Local dissipative Hamiltonian description of reversible reaction networksIrene Otero-Muras, Gábor Szederkényi, Antonio A. Alonso, Katalin M. Hangos. scl, 57(7):554-560, 2008. [doi]

Dynamic analysis and control of biochemical reaction networksIrene Otero-Muras, Gábor Szederkényi, Katalin M. Hangos, Antonio A. Alonso. mcs, 79(4):999-1009, 2008. [doi]

2007

A systematic approach to plant-wide control based on thermodynamicsLuis T. Antelo, Irene Otero-Muras, Julio R. Banga, Antonio A. Alonso. cce, 31(5-6):677-691, 2007. [doi]

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