Shoshana J. Wodak - researchr alias

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Viewing Publication 1 - 26 from 26

2021

The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategiesVaishali P. Waman, Neeladri Sen, Mihaly Varadi, Antoine Daina, Shoshana J. Wodak, Vincent Zoete, Sameer Velankar, Christine A. Orengo. bib, 22(2):742-768, 2021. [doi]

2018

Submit a Topic Page to PLOS Computational Biology and WikipediaDaniel Mietchen, Shoshana J. Wodak, Szymon Wasik, Natalia Szostak, Christophe Dessimoz. ploscb, 14(5), 2018. [doi]

2012

2011

2010

2009

Markov clustering versus affinity propagation for the partitioning of protein interaction graphsJames Vlasblom, Shoshana J. Wodak. bmcbi, 10, 2009. [doi]

2008

LigASite - a database of biologically relevant binding sites in proteins with known ::::apo::::-structuresBenoit H. Dessailly, Marc F. Lensink, Christine A. Orengo, Shoshana J. Wodak. nar, 36(Database-Issue):667-673, 2008. [doi]

Local coherence in genetic interaction patterns reveals prevalent functional versatilityShuye Pu, Karen Ronen, James Vlasblom, Jack Greenblatt, Shoshana J. Wodak. bioinformatics, 24(20):2376-2383, 2008. [doi]

2007

Relating destabilizing regions to known functional sites in proteinsBenoit H. Dessailly, Marc F. Lensink, Shoshana J. Wodak. bmcbi, 8, 2007. [doi]

Recognizing protein-protein interfaces with empirical potentials and reduced amino acid alphabetsGuillaume Launay, Raul Mendez, Shoshana J. Wodak, Thomas Simonson. bmcbi, 8, 2007. [doi]

2006

GenePro: a cytoscape plug-in for advanced visualization and analysis of interaction networksJames Vlasblom, Samuel Wu, Shuye Pu, Mark Superina, Gina Liu, Chris Orsi, Shoshana J. Wodak. bioinformatics, 22(17):2178-2179, 2006. [doi]

2005

Metabolic PathFinding: inferring relevant pathways in biochemical networksDidier Croes, Fabian Couche, Shoshana J. Wodak, Jacques van Helden. nar, 33(Web-Server-Issue):326-330, 2005. [doi]

2004

The aMAZE LightBench: a web interface to a relational database of cellular processesChristian Lemer, Erick Antezana, Fabian Couche, Frédéric Fays, Xavier Santolaria, Rekin s Janky, Yves Deville, Jean Richelle, Shoshana J. Wodak. nar, 32(Database-Issue):443-448, 2004.

ACLAME: A CLAssification of Mobile genetic ElementsRaphaël Leplae, Aline Hebrant, Shoshana J. Wodak, Ariane Toussaint. nar, 32(Database-Issue):45-49, 2004.

Combining pattern discovery and discriminant analysis to predict gene co-regulationN. Simonis, Shoshana J. Wodak, G. N. Cohen, Jacques van Helden. bioinformatics, 20(15):2370-2379, 2004. [doi]

2003

An Overview of Data Models for the Analysis of Biochemical PathwaysYves Deville, David Gilbert, Jacques van Helden, Shoshana J. Wodak. cmsb 2003: 174 [doi]

An overview of data models for the analysis of biochemical pathwaysYves Deville, David Gilbert, Jacques van Helden, Shoshana J. Wodak. bib, 4(3):246-259, 2003.

2002

Advanced pairwise structure alignments of proteins and analysis of conformational changesMaria Elena Ochagavia, Jean Richelle, Shoshana J. Wodak. bioinformatics, 18(4):637-640, 2002.

2001

From Molecular Activities and Processes to Biological FunctionJacques van Helden, Avi Naim, Christian Lemer, Renato Mancuso, Matthew Eldridge, Shoshana J. Wodak. bib, 2(1):81-107, 2001.

2000

Application of Regulatory Sequence Analysis and Metabolic Network Analysis to the Interpretation of Gene Expression DataJacques van Helden, David Gilbert, Lorenz Wernisch, Michael Schroeder, Shoshana J. Wodak. jobim 2001: 147-164 [doi]

1999

Logical Tools for Quering and Assisting Annotation of a Biochemical Pathway DatabaseJacques van Helden, David Gilbert, Lorenz Wernisch, Renato Mancuso, Matthew Eldridge, Kirill Degtyarenko, Shoshana J. Wodak. gcb 1999: 227-229

1997

Molecular Systematics in Three DimensionsShoshana J. Wodak. gcb 1997: 21

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