Sohrab P. Shah - researchr alias

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Viewing Publication 1 - 20 from 20

2024

Population Priors for Matrix FactorizationSohrab Salehi, Achille Nazaret, Sohrab P. Shah, David M. Blei. tmlr, 2024, 2024. [doi]

2020

2019

Integrated structural variation and point mutation signatures in cancer genomes using correlated topic modelsTyler Funnell, Allen W. Zhang, Diljot Grewal, Steven McKinney, Ali Bashashati, Yi Kan Wang, Sohrab P. Shah. ploscb, 15(2), 2019. [doi]

12 Grand Challenges in Single-Cell Data ScienceDavid Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth. peerjpre, 7, 2019. [doi]

2016

densityCut: an efficient and versatile topological approach for automatic clustering of biological dataJiarui Ding, Sohrab P. Shah, Anne Condon. bioinformatics, 32(17):2567-2576, 2016. [doi]

2013

A robust hidden semi-Markov model with application to aCGH data processingJiarui Ding, Sohrab P. Shah. ijdmb, 8(4):427-442, 2013. [doi]

2012

Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing dataJiarui Ding, Ali Bashashati, Andrew Roth, Arusha Oloumi, Kane Tse, Thomas Zeng, Gholamreza Haffari, Martin Hirst, Marco A. Marra, Anne Condon, Sam Aparicio, Sohrab P. Shah. bioinformatics, 28(2):167-175, 2012. [doi]

Discovery of Complex Genomic Rearrangements in Cancer Using High-Throughput SequencingAndrew McPherson, Chunxiao Wu, Alexander Wyatt, Sohrab P. Shah, Colin Collins, Süleyman Cenk Sahinalp. recomb 2012: 181-182 [doi]

JointSNVMix: a probabilistic model for accurate detection of somatic mutations in normal/tumour paired next-generation sequencing dataAndrew Roth, Jiarui Ding, Ryan D. Morin, Anamaria Crisan, Gavin Ha, Ryan Giuliany, Ali Bashashati, Martin Hirst, Gulisa Turashvili, Arusha Oloumi, Marco A. Marra, Sam Aparicio, Sohrab P. Shah. bioinformatics, 28(7):907-913, 2012. [doi]

2011

2010

Robust hidden semi-Markov modeling of array CGH dataJiarui Ding, Sohrab P. Shah. bibm 2010: 603-608 [doi]

SNVMix: predicting single nucleotide variants from next-generation sequencing of tumorsRodrigo Goya, Mark G. F. Sun, Ryan D. Morin, Gillian Leung, Gavin Ha, Kimberley C. Wiegand, Janine Senz, Anamaria Crisan, Marco A. Marra, Martin Hirst, David Huntsman, Kevin P. Murphy, Sam Aparicio, Sohrab P. Shah. bioinformatics, 26(6):730-736, 2010. [doi]

2009

Model-based clustering of array CGH dataSohrab P. Shah, K-John Cheung Jr., Nathalie A. Johnson, Guillaume Alain, Randy D. Gascoyne, Douglas E. Horsman, Raymond T. Ng, Kevin P. Murphy. bioinformatics, 25(12), 2009. [doi]

2007

Modeling recurrent DNA copy number alterations in array CGH dataSohrab P. Shah, Wan L. Lam, Raymond T. Ng, Kevin P. Murphy. ismb 2007: 450-458 [doi]

2006

A Novel Algorithm For the Analysis Of Array Cgh DataMehrnoush Khojasteh, Bradley P. Coe, Sohrab P. Shah, Rabab K. Ward, Wan L. Lam, Calum MacAulay. icassp 2006: 1020-1023 [doi]

Integrating copy number polymorphisms into array CGH analysis using a robust HMMSohrab P. Shah, Xiang Xuan, Ronald J. deLeeuw, Mehrnoush Khojasteh, Wan L. Lam, Raymond T. Ng, Kevin P. Murphy. ismb 2006: 431-439 [doi]

2005

Atlas - a data warehouse for integrative bioinformaticsSohrab P. Shah, Yong Huang, Tao Xu, Macaire M. S. Yuen, John Ling, B. F. Francis Ouellette. bmcbi, 6:34, 2005. [doi]

2004

Pegasys: software for executing and integrating analyses of biological sequencesSohrab P. Shah, David Y. M. He, Jessica N. Sawkins, Jeffrey C. Druce, Gerald Quon, Drew Lett, Grace X. Y. Zheng, Tao Xu, B. F. Francis Ouellette. bmcbi, 5:40, 2004. [doi]

2003

GeneComber: Combining Outputs of Gene Prediction Programs for Improved ResultsSohrab P. Shah, Graham P. McVicker, Alan K. Mackworth, Sanja Rogic, B. F. Francis Ouellette. bioinformatics, 19(10):1296-1297, 2003.

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