Tsjerk A. Wassenaar - researchr alias

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Viewing Publication 1 - 12 from 12

2026

Peptide-nanoparticle platforms for antisense therapeutics: A coarse-grained modeling approach to brain deliveryBurcu Yesildag Uner, Alper Demir 0003, Pingkun Zhou, Ekim Z. Taskiran, Tsjerk A. Wassenaar. cbm, 203:111479, 2026. [doi]

2023

Unbreaking Assemblies in Molecular Simulations with Periodic BoundariesBart M. H. Bruininks, Tsjerk A. Wassenaar, Ilpo Vattulainen. jcisd, 63(11):3448-3452, June 2023. [doi]

2021

General Protocol for Constructing Molecular Models of NanodiscsLisbeth Ravnkilde Kjølbye, Leonardo De Maria, Tsjerk A. Wassenaar, Haleh Abdizadeh, Siewert J. Marrink, Jesper Ferkinghoff-Borg, Birgit Schiøtt. jcisd, 61(6):2869-2883, 2021. [doi]

Asymmetric CorA Gating Mechanism as Observed by Molecular Dynamics SimulationsMariia Nemchinova, Josef Melcr, Tsjerk A. Wassenaar, Siewert J. Marrink, Albert Guskov. jcisd, 61(5):2407-2417, 2021. [doi]

2018

Dopamine transporter oligomerization involves the scaffold domain, but spares the bundle domainKumaresan Jayaraman, Alex N. Morley, Dániel Szöllosi, Tsjerk A. Wassenaar, Harald H. Sitte, Thomas Stockner. ploscb, 14(6), 2018. [doi]

2017

eTOX ALLIES: an automated pipeLine for linear interaction energy-based simulationsLuigi Capoferri, Marc van Dijk, Ariën S. Rustenburg, Tsjerk A. Wassenaar, Derk P. Kooi, Eko A. Rifai, Nico P. E. Vermeulen, Daan P. Geerke. jcheminf, 9(1), 2017. [doi]

2016

Dynamic Cholesterol-Conditioned Dimerization of the G Protein Coupled Chemokine Receptor Type 4Kristyna Pluhackova, Stefan Gahbauer, Franziska Kranz, Tsjerk A. Wassenaar, Rainer A. Böckmann. ploscb, 12(11), 2016. [doi]

2012

2011

2006

The effect of box shape on the dynamic properties of proteins simulated under periodic boundary conditionsTsjerk A. Wassenaar, Alan E. Mark. jcc, 27(3):316-325, 2006. [doi]

2004

A method to obtain a near-minimal-volume molecular simulation of a macromolecule, using periodic boundary conditions and rotational constraintsHenk Bekker, Jur P. van den Berg, Tsjerk A. Wassenaar. jcc, 25(8):1037-1046, 2004. [doi]

2003

Constructing a Near-Minimal-Volume Computational Box for Molecular Dynamics Simulations with Periodic Boundary ConditionsHenk Bekker, Jur P. van den Berg, Tsjerk A. Wassenaar. iccS 2003: 70-79 [doi]

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