Vincent J. Carey - researchr alias

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Viewing Publication 1 - 19 from 19

2023

Curated single cell multimodal landmark datasets for R/BioconductorKelly B. Eckenrode, Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger, Aedín C. Culhane, Laurent Gatto, Vincent J. Carey, Martin Morgan, Davide Risso, Levi Waldron. ploscb, 19(8), 2023. [doi]

2021

Toward a gold standard for benchmarking gene set enrichment analysisLudwig Geistlinger, Gergely Csaba, Mara Santarelli, Marcel Ramos, Lucas Schiffer, Nitesh Turaga, Charity Law, Sean Davis, Vincent J. Carey, Martin Morgan, Ralf Zimmer, Levi Waldron. bib, 22(1):545-556, 2021. [doi]

2019

2017

ogttMetrics: Data structures and algorithms for oral glucose tolerance testsBenjamin J. Stubbs, Keith Frankston, Marcel Ramos, Nancy Laranjo, Frank M. Sacks, Vincent J. Carey. f1000research, 6:684, 2017. [doi]

2016

Public data and open source tools for multi-assay genomic investigation of diseaseLavanya Kannan, Marcel Ramos, Angela Re, Nehme Hachem, Zhaleh Safikhani, Deena M. A. Gendoo, Sean Davis, David Gomez-Cabrero, Robert Castelo, Kasper D. Hansen, Vincent J. Carey, Martin Morgan, Aedín C. Culhane, Benjamin Haibe-Kains, Levi Waldron. bib, 17(4):603-615, 2016. [doi]

2014

VariantAnnotation: a Bioconductor package for exploration and annotation of genetic variantsValerie Obenchain, Michael F. Lawrence, Vincent J. Carey, Stephanie M. Gogarten, Paul Shannon, Martin Morgan. bioinformatics, 30(14):2076-2078, 2014. [doi]

2013

Software for Computing and Annotating Genomic RangesMichael F. Lawrence, Wolfgang Huber, Hervé Pagès, Patrick Aboyoun, Marc Carlson, Robert Gentleman, Martin T. Morgan, Vincent J. Carey. ploscb, 9(8), 2013. [doi]

2011

Quantifying differential gene connectivity between disease states for objective identification of disease-relevant genesJen-hwa Chu, Ross Lazarus, Vincent J. Carey, Benjamin A. Raby. bmcsb, 5:89, 2011. [doi]

2009

Power enhancement via multivariate outlier testing with gene expression arraysAdam L. Asare, Zhong Gao, Vincent J. Carey, Richard Wang, Vicki Seyfert-Margolis. bioinformatics, 25(1):48-53, 2009. [doi]

Data structures and algorithms for analysis of genetics of gene expression with Bioconductor: GGtools 3.xVincent J. Carey, Adam R. Davis, Michael F. Lawrence, Robert Gentleman, Benjamin A. Raby. bioinformatics, 25(11):1447-1448, 2009. [doi]

Interpreting Genetics Of Gene Expression: Integrative Architecture In BioconductorVincent J. Carey, Robert Gentleman. psb 2009: 380-390 [doi]

A graphical model approach for inferring large-scale networks integrating gene expression and genetic polymorphismJen-hwa Chu, Scott T. Weiss, Vincent J. Carey, Benjamin A. Raby. bmcsb, 3:55, 2009. [doi]

Platform dependence of inference on gene-wise and gene-set involvement in human lung developmentRose Du, Kelan Tantisira, Vincent J. Carey, Soumyaroop Bhattacharya, Stephanie Metje, Alvin T. Kho, Barbara J. Klanderman, Roger Gaedigk, Ross Lazarus, Thomas J. Mariani, J. Steven Leeder, Scott T. Weiss. bmcbi, 10, 2009. [doi]

rtracklayer: an R package for interfacing with genome browsersMichael F. Lawrence, Robert Gentleman, Vincent J. Carey. bioinformatics, 25(14):1841-1842, 2009. [doi]

2008

SGDI: System for Genomic Data IntegrationVincent J. Carey, Jeff Gentry, D. Sarkar, Robert Gentleman, S. Ramaswamy. psb 2008: 141-152 [doi]

2007

Graphs in molecular biologyWolfgang Huber, Vincent J. Carey, Li Long, Seth Falcon, Robert Gentleman. bmcbi, 8(S-6), 2007. [doi]

Machine Learning and Its Applications to BiologyAdi L. Tarca, Vincent J. Carey, Xue-wen Chen, Roberto Romero, Sorin Draghici. ploscb, 3(6), 2007. [doi]

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