Journal: J. Bioinformatics and Computational Biology

Volume 1, Issue 4

595 -- 610Brona Brejová, Daniel G. Brown, Tomás Vinar. Optimal Spaced Seeds for Homologous Coding Regions
611 -- 626Lorraine K. Tanabe, W. John Wilbur. Generation of a Large Gene/protein Lexicon by Morphological Pattern Analysis
627 -- 646Heng Dai, Bin Tian, Wei D. Zhao, Albert Leung, Simon R. Smith, Jackson S. Wan, Xiang Yao. Dynamic Integration of Gene Annotation and its Application to Microarray Analysis
647 -- 680Stergios Papadimitriou, Spiridon D. Likothanassis. Kernel-based Self-organized Maps Trained with Supervised Bias for Gene Expression Data Analysis
681 -- 694Mat Soukup, Jae K. Lee. Developing Optimal Prediction Models for Cancer Classification Using Gene Expression Data
695 -- 710Miwaka Ohtani, Ayaka Saka, Fumi Sano, Yoshikazu Ohya, Shinichi Morishita. Development of Image Processing Program for Yeast Cell Morphology
711 -- 742See-Kiong Ng, Soon-Heng Tan. Discovering Protein-protein Interactions
743 -- 750Graziela Miê Peres Lopes, Sandro José De Souza. Dissecting the Human Spliceosome through Bioinformatics and Proteomics Approaches

Volume 1, Issue 3

433 -- 446Yuan Liu, Yuhong Wang, Kimberly Folander, Guochun Xie, Richard Blevins. An Interactive Tool for Extracting Exons and Snp from Genomic Sequence: Isolation of Hcn1 and Hcn3 Ion Channel Genes
447 -- 458Xiwei Wu, T. Gregory Dewey. Cluster Analysis of Dynamic Parameters of Gene Expression
459 -- 474Seiya Imoto, Christopher J. Savoie, Sachiyo Aburatani, SunYong Kim, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano. Use of Gene Networks for Identifying and Validating Drug Targets
475 -- 494Gary W. Stuart, Michael W. Berry. A Comprehensive Whole Genome Bacterial Phylogeny Using Correlated Peptide Motifs Defined in a High Dimensional Vector Space
495 -- 504Harpreet Kaur, G. P. S. Raghava. Bteval: a Server for Evaluation of beta-turn Prediction Methods
505 -- 520Mounir Errami, Christophe Geourjon, Gilbert Deléage. Conservation of Amino Acids into Multiple Alignments Involved in Pairwise Interactions in Three-dimensional Protein Structures
521 -- 540C. K. Tham, C. K. Heng, W. C. Chin. Predicting Risk of Coronary Artery Disease from Dna Microarray-based Genotyping Using Neural Networks and Other Statistical Analysis Tool
541 -- 586Tero Aittokallio, Markus Kurki, Olli Nevalainen, Tuomas Nikula, Anne West, Riitta Lahesmaa. Computational Strategies for Analyzing Data in Gene Expression Microarray Experiments

Volume 1, Issue 2

205 -- 230. Foreword
231 -- 252Seiya Imoto, SunYong Kim, Takao Goto, Sachiyo Aburatani, Kousuke Tashiro, Satoru Kuhara, Satoru Miyano. Bayesian Network and Nonparametric Heteroscedastic Regression for Nonlinear Modeling of Genetic Network
253 -- 266Masazumi Takahashi, Fumihiko Matsuda, Nino Margetic, Mark G. Lathrop. Automated Identification of Single Nucleotide Polymorphismsfrom Sequencing Data
267 -- 288Chuan Yi Tang, Chin Lung Lu, Margaret Dah-Tsyr Chang, Yin-Te Tsai, Yuh-Ju Sun, Kun-Mao Chao, Jia-Ming Chang, Yu-Han Chiou, Chia-Mao Wu, Hao-Teng Chang, Wei-I Chou. Constrained Multiple Sequence Alignment Tool Development Andits Application to Rnase Family Alignment
289 -- 306Ann E. Loraine, Gregg A. Helt, Melissa S. Cline, Michael A. Siani-Rose. Exploring Alternative Transcript Structure in the Humangenome Using Blocks and Interpro
307 -- 342Mathew J. Palakal, Matthew Stephens, Snehasis Mukhopadhyay, Rajeev R. Raje, Simon Rhodes. Identification of Biological Relationships from Text Documentsusing Efficient Computational Methods
343 -- 362Sven Rahmann. Fast Large Scale Oligonucleotide Selection Using the Longest Common Factor Approach
363 -- 386Jun Ogasawara, Shinichi Morishita. A Fast and Sensitive Algorithm for Aligning Ests to the Human Genome
387 -- 410Guohui Lin, Dong Xu, Zhi-Zhong Chen, Tao Jiang, Jianjun Wen, Ying Xu. Computational Assignment of Protein Backbone Nmr Peaks Byefficient Bounding and Filtering
411 -- 431Alessandro Vullo, Paolo Frasconi. Prediction of Protein Coarse Contact Maps

Volume 1, Issue 1

3 -- 20. Preface
21 -- 40Victor Olman, Dong Xu, Ying Xu. Cubic: Identification of Regulatory Binding Sites through Data Clustering
41 -- 70Jing Li 0002, Tao Jiang. Efficient Inference of Haplotypes from Genotypes on a Pedigree
71 -- 94Michal Ozery-Flato, Ron Shamir. Two Notes on Genome Rearrangement
95 -- 118Jinbo Xu, Ming Li, Dongsup Kim, Ying Xu. Raptor: Optimal Protein Threading by Linear Programming
119 -- 138Liping Wei, Russ B. Altman. Recognizing Complex, Asymmetric Functional Sites in Protein Structures Using a Bayesian Scoring Function
139 -- 168Huiqing Liu, Limsoon Wong. Data Mining Tools for Biological Sequences
169 -- 178Seth Michelson. Assessing the Impact of Predictive Biosimulation on Drug Discovery and Development
179 -- 182Vladimir Brusic. From Immunoinformatics to Immunomics
183 -- 200P. Kearney, P. Thibault. Bioinformatics Meets Proteomics - Bridging the Gap between Massspectrometry Data Analysis and Cell Biology