Fine-tuning a pre-trained Transformers-based model for gene name entity recognition in biomedical text using a customized dataset: case of Desulfovibrio vulgaris Hildenborough

Alain Bertrand Bomgni, Dialo Abdala, Bichar Dip Shrestha Gurung, Marcellin Julius Antonio Nkenlifack, Venkataramana Gadhamshetty, Etienne Z. Gnimpieba. Fine-tuning a pre-trained Transformers-based model for gene name entity recognition in biomedical text using a customized dataset: case of Desulfovibrio vulgaris Hildenborough. In Xingpeng Jiang, Haiying Wang, Reda Alhajj, Xiaohua Hu, Felix Engel 0003, Mufti Mahmud, Nadia Pisanti, Xuefeng Cui, Hong Song, editors, IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2023, Istanbul, Turkiye, December 5-8, 2023. pages 4473-4479, IEEE, 2023. [doi]

Authors

Alain Bertrand Bomgni

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Dialo Abdala

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Bichar Dip Shrestha Gurung

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Marcellin Julius Antonio Nkenlifack

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Venkataramana Gadhamshetty

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Etienne Z. Gnimpieba

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