A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs

Cheng Ling, Khaled Benkrid, Tsuyoshi Hamada. A parameterisable and scalable Smith-Waterman algorithm implementation on CUDA-compatible GPUs. In Proceedings of the IEEE 7th Symposium on Application Specific Processors, SASP 2009, San Francisco, CA, USA , July 27-28, 2009. pages 94-100, IEEE Computer Society, 2009. [doi]

Abstract

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