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Shu-Yi Su, Julian E. Asher, Marjo-Riita Jarvelin, Phillipe Froguel, Alexandra I. F. Blakemore, David J. Balding, Lachlan J. M. Coin. Inferring combined CNV/SNP haplotypes from genotype data. Bioinformatics, 26(11):1437-1445, 2010. [doi]