Table of Contents

• The Future of BioinformaticsPhilip E. Bourne. 3 [doi]
• Molecular Imaging and Biomedical Process ModelingDavid Dagan Feng. 5-10 [doi]
• Representing Experimental Biological Data in Metabolic NetworksTim Dwyer, Hardy Rolletschek, Falk Schreiber. 13-20 [doi]
• A Novel Method for Protein Subcellular Localization Based on Boosting and Probabilistic Neural Network.Jian Guo, Yuanlie Lin, Zhirong Sun. 21-27 [doi]
• BRINet: A BioResource Integration NetworkJason E. Sew Hoy, Alan F. McCulloch, John R. McDonald. 29-34 [doi]
• Transmembrane Region Prediction with Hydropathy Index/Charge Two-Dimensional Trajectories of Stochastic Dynamical SystemsTakashi Kaburagi, Daigo Muramatsu, Sho Hashimoto, Masahiro Sasaki, Takashi Matsumoto. 35-42 [doi]
• Integrating Biopathway Databases for Large-scale Modeling and SimulationMasao Nagasaki, Atsushi Doi, Hiroshi Matsuno, Satoru Miyano. 43-52 [doi]
• PathwayFinder: Paving the Way Towards Automatic Pathway ExtractionDaming Yao, Jingbo Wang, Yanmei Lu, Nathan Noble, Huandong Sun, Xiaoyan Zhu, Nan Lin, Donald G. Payan, Ming Li, Kunbin Qu. 53-62 [doi]
• Support Vector Machine Approach for Cancer Detection Using Amplified Fragment Length Polymorphism (AFLP) Screening Method.Waiming Kong, Lawrence Tham, Kee Yew Wong, Patrick Tan. 63-66 [doi]
• Use of Built-in Features in the Interpretation of High-dimensional Cancer Diagnosis Data.Jinyan Li, Huiqing Liu, Limsoon Wong. 67-74 [doi]
• Using Emerging Pattern Based Projected Clustering and Gene Expression Data for Cancer DetectionLarry T. H. Yu, Fu-Lai Chung, Stephen Chi-fai Chan, Simon M. C. Yuen. 75-84 [doi]
• Variable-length Intervals in Homology SearchAbhijit Chattaraj, Hugh E. Williams. 85-91 [doi]
• Ladderlike Stepping and Interval Jumping Searching Algorithms for DNA SequencesTun-Wen Pai, Margaret Dah-Tsyr Chang, Jia-Han Chu, Wei-Yuan Chang, Hsiu Ling Tai. 93-98 [doi]
• A Combined Model and a Varied Gibbs Sampling Algorithm Used for Motif DiscoveryXiaoming Wu, Bo Wang, Changxin Song, Jingzhi Cheng. 99-104 [doi]
• Constructing Genome Scale Suffix TreesA. L. Brown. 105-112 [doi]
• EMAGEN: An Efficient Approach to Multiple Whole Genome AlignmentJitender S. Deogun, Jingyi Yang, Fangrui Ma. 113-122 [doi]
• Whole-Genome Functional Classification of Genes by Latent Semantic Analysis on Microarray DataSee-Kiong Ng, Zexuan Zhu, Yew-Soon Ong. 123-129 [doi]
• A Dihedral Angle Database of Short Sub-sequences for Protein Structure PredictionSaravanan Dayalan, Savitri Bevinakoppa, Heiko Schröder. 131-137 [doi]
• Nonparametric Approaches to Detecting Differentially Expressed Genes in Replicated Microarray ExperimentsMarkus Neuhäuser, Fred C. Lam. 139-143 [doi]
• Mega Weaver: A Simple Iterative Approach for BAC Consensus AssemblyDaolong Wang, Mario Lauria, Bo Yuan, Fred A. Wright. 145-153 [doi]
• An Empirical Bayes Adjustment to Multiple p-values for the Detection of Differentially Expressed Genes in Microarray ExperimentsSomnath Datta, Susmita Datta. 155-159 [doi]
• A Novel Feature Selection Method to Improve Classification of Gene Expression DataLiang Goh, Qun Song, Nikola K. Kasabov. 161-166 [doi]
• On the Simultaneous Use of Clinical and Microarray Expression Data in the Cluster Analysis of Tissue SamplesGeoffrey J. McLachlan, Soong Chang, Jess Mar, Christophe Ambroise, Justin Xi Zhu. 167-171 [doi]
• A Brief Introduction to the Phylogentics Analysis Library V1.5Matthew Goode, Korbinian Strimmer, Alexei Drummond, Ed Buckler, Allen G. Rodrigo. 175-179 [doi]
• Identifying Character Non-Independence in Phylogenetic Data Using Data Mining TechniquesAnne M. Maglia, Jennifer L. Leopold, Venkat Ram Ghatti. 181-189 [doi]
• Protein Side-chain Packing Problem: A Maximum Edge-weight Clique Algorithmic ApproachDukka Bahadur, Tatsuya Akutsu, Etsuji Tomita, Tomokazu Seki. 191-200 [doi]
• Informative 3D Visualization of Multiple Protein StructuresPaulo Lai, Warren Kaplan, W. Bret Church, Raymond K. Wong. 201-208 [doi]
• THEMATICS is Effective for Active Site Prediction in Comparative Model StructuresIhsan A. Shehadi, Alper Uzun, Leonel F. Murga, Valentin A. Ilyin, Mary Jo Ondrechen. 209-215 [doi]
• Recognition Sequences in the Restriction EndonucleasesJan C. Biro, Josephine M. K. Biro. 217-222 [doi]
• Multiple Sequence Alignment Using Tabu SearchTariq Riaz, Yi Wang, Kuo-Bin Li. 223-232 [doi]
• Structure-Function Relationship in DNA Sequence Recognition by Transcription FactorsAkinori Sarai, Samuel Selvaraj, M. Michael Gromiha, Hidetoshi Kono. 233-238 [doi]
• RNA Secondary Structure Prediction with Simple PseudoknotsJitender S. Deogun, Ruben Donts, Olga Komina, Fangrui Ma. 239-246 [doi]
• Filtering of Ineffective siRNAs and Improved siRNA Design ToolPrudence W. H. Wong, Tak Wah Lam, Y. C. Mui, Siu-Ming Yiu, H. F. Kung, Marie C. M. Lin, Y. T. Cheung. 247-255 [doi]
• Exact Pattern Matching for RNA Secondary StructuresYing Yu, Lusheng Wang, Xiaotie Deng. 257-263 [doi]
• Detecting Local Symmetry Axis in 3-dimensional Virus StructuresJing He, Desh Ranjan, Wen Jiang, Wah Chiu, Michael F. Schmid. 265-270 [doi]
• Initial SARS Genome Data Analysis Using a Bioinformatics PlatformHong Luo, Jingchu Luo. 271-276 [doi]
• Evolution of Relative Synonymous Codon Usage in Human Immunodeficiency Virus Type 1Peter L. Meintjes, Allen G. Rodrigo. 277-282 [doi]
• A Rapid Method of Whole Genome Visualisation Illustrating Features in Both Coding and Non-coding RegionsRoss Hall, Linda Stern. 285-290 [doi]
• Evolving Genetic Regulatory Networks Using an Artificial GenomeJennifer Hallinan, Janet Wiles. 291-296 [doi]
• Cluster Ensemble and Its Applications in Gene Expression AnalysisXiaohua Hu, Illhoi Yoo. 297-302 [doi]
• Advanced Texturing Techniques for the Effective Visualization of Neoroanatomy from Diffusion Tensor Imaging DataBurkhard Wünsche. 303-308 [doi]
• Measuring Correlation between Microarray Time-series Data using Dominant Spectrum ComponentLap Kun Yeung, Hong Yan, Alan Wee-Chung Liew, Lap Keung Szeto, Michael Yang, Richard Kong. 309-314 [doi]
• Phylogenetic Trees: An Information Visualisation PerspectiveSavrina F. Carrizo. 315-320 [doi]
• Phylogenetic Tree of Prokaryotes Based on the Complete Genomes using Fractal and Correlation AnalysesZu-Guo Yu, Vo Anh. 321-326 [doi]
• Dispensation Order Generation for PyrosequencingMats Carlsson, Nicolas Beldiceanu. 327-332 [doi]
• Classification Comparison of Prediction of Solvent Accessibility From Protein SequencesHuiling Chen, Huan-Xiang Zhou, Xiaohua Hu, Illhoi Yoo. 333-338 [doi]
• A Pathway Editor for Literature-based Knowledge CurationKen-ichiro Fukuda, Toshihisa Takagi. 339-344 [doi]
• Empirical Knowledge and Genetic Algorithms for Selection of Amide I Frequencies in Protein Secondary Structure PredictionJoachim A. Hering, Peter R. Innocent, Parvez I. Haris. 345-350 [doi]
• Towards a Theory of Protein Adsorption: Predicting the Adsorption of Proteins on Surfaces via a Piecewise Linear ModelDan V. Nicolau Jr., Dan V. Nicolau. 351-356 [doi]
• Local Prediction Approach of Protein Classification using Probabilistic Suffix TreesZhaohui Sun. 357-362 [doi]