Abstract is missing.
- A Benchmarking Study of Random Projections and Principal Components for Dimensionality Reduction Strategies in Single Cell AnalysisMohamed Abdelnaby, Marmar Moussa. 1-15 [doi]
- Resistance Genes are Distinct in Protein-Protein Interaction Networks According to Drug Class and Gene MobilityNazifa Ahmed Moumi, Connor L. Brown, Shafayat Ahmed, Peter J. Vikesland, Amy Pruden, Liqing Zhang 0002. 16-27 [doi]
- DuoHash: Fast Hashing of Spaced Seeds with Application to Spaced K-mers CountingLeonardo Gemin, Cinzia Pizzi, Matteo Comin. 28-39 [doi]
- Unsupervised Learning for Tertiary Structure Prediction of Protein Molecules: Systematic ReviewKazi Lutful Kabir. 40-53 [doi]
- Fast and Succinct Compression of k-mer Sets with Plain Text Representation of Colored de Bruijn GraphsEnrico Rossignolo, Matteo Comin. 54-65 [doi]
- Enhancing Protein Side Chain Packing Using Rotamer Clustering and Machine LearningMohammed Alamri, Mohammad Al Sallal, Kamal Al-Nasr, Muhammad Akbar, Ahmad Jad Allah. 66-77 [doi]
- Can Language Models Reason About ICD Codes to Guide the Generation of Clinical Notes?Ivan Makohon, Jian Wu 0006, Bintao Feng, Yaohang Li. 78-89 [doi]
- Link Prediction in Disease-Disease Interactions Network Using a Hybrid Deep Learning ModelAshwag Altayyar, Li Liao. 90-102 [doi]
- Model Selection for Sparse Microbial Network Inference Using Variational ApproximationShibu Yooseph. 103-129 [doi]
- Haplotype-Based Parallel PBWT for Biobank Scale DataKecong Tang, Ahsan Sanaullah, Degui Zhi, Shaojie Zhang 0001. 130-143 [doi]
- Mammo-Bench: A Large-Scale Benchmark Dataset of Mammography ImagesGaurav Bhole, S. Suba, Nita Parekh. 144-156 [doi]
- MetaEdit: Computational Identification of RNA Editing in MicrobiomesArpit Mehta, Vitalii Stebliankin, Kalai Mathee, Giri Narasimhan. 157-170 [doi]
- Drug-Centric Prior Improves Drug Response Modeling in Partially Overlapping Pharmacogenomic ScreensDharani Thirumalaisamy, Sunil K. Joshi, Stephen E. Kurtz, Tania Q. Vu, Jeffrey W. Tyner, Mehmet Gönen, Olga Nikolova. 171-182 [doi]
- Improving Inter-helical Residue Contact Prediction in α-Helical Transmembrane Proteins Using Structural Neighborhood Crowdedness InformationAman Sawhney, Li Liao. 183-194 [doi]
- Explaining Protein Folding Networks Using Integrated Gradients and Attention MechanismsRukmangadh Sai Myana, Sumit Kumar Jha. 195-211 [doi]
- Computationally Reconstructing the Evolution of Cancer Progression RiskKefan Cao, Russell Schwartz. 212-223 [doi]
- Cancer Diseases Classification with Sparse Neural Networks: An Information-Theoretic ApproachZahra Jandaghi, Sixiang Zhang, Xiuzhen Huang, Liming Cai. 224-237 [doi]
- Epistatic Density of Viral Variants in Acute and Chronic HCV PatientsAlina Nemira, Akshay Juyal, Pavel Skums, Alexander Zelikovsky. 238-248 [doi]
- Applying Genetic Algorithm with Saltations to MAX-3SATRyan Alomair, Hafsa Farooq, Daniel Novikov, Akshay Juyal, Alexander Zelikovsky. 249-263 [doi]
- Computing Gram Matrix for SMILES Strings Using RDKFingerprint and Sinkhorn-Knopp AlgorithmSarwan Ali, Haris Mansoor, Prakash Chourasia, Imdad Ullah Khan, Murray Patterson. 264-276 [doi]
- Enhancing Privacy Preservation and Reducing Analysis Time with Federated Transfer Learning in Digital Twins-Based Computed Tomography Scan AnalysisAvais Jan, Qasim Zia, Murray Patterson. 277-289 [doi]
- Improved Graph-Based Antibody-Aware Epitope Prediction with Protein Language Model-Based EmbeddingsMansoor Ahmed, Sarwan Ali, Avais Jan, Imdad Ullah Khan, Murray Patterson. 290-302 [doi]
- Leveraging RNA LLMs for 3D Structure Prediction via Data AugmentationSixiang Zhang, Harish Anand, Liming Cai. 303-316 [doi]
- EfficientNet in Digital Twin-Based Cardiac Arrest Prediction and AnalysisQasim Zia, Avais Jan, zafar iqbal, Muhammad Mumtaz Ali, Mukarram Ali, Murray Patterson. 317-328 [doi]
- AmpliconHunter: A Scalable Tool for PCR Amplicon Prediction from Microbiome SamplesRye Howard-Stone, Ion I. Mandoiu. 329-344 [doi]
- Neuromorphic Spiking Neural Network Based Classification of COVID-19 Spike SequencesTaslim Murad, Prakash Chourasia, Sarwan Ali, Avais Jan, Murray Patterson. 345-356 [doi]