Abstract is missing.
- Searching Protein 3-D Structures in Linear TimeTetsuo Shibuya. 1-15 [doi]
- Optimization-Based Peptide Mass Fingerprinting for Protein Mixture IdentificationZengyou He, Chao Yang, Can Yang, Robert Z. Qi, Jason Po-Ming Tam, Weichuan Yu. 16-30 [doi]
- Boosting Protein Threading AccuracyJian Peng, Jinbo Xu. 31-45 [doi]
- New Perspectives on Gene Family Evolution: Losses in Reconciliation and a Link with SupertreesCedric Chauve, Nadia El-Mabrouk. 46-58 [doi]
- A Probabilistic Graphical Model for Ab Initio FoldingFeng Zhao, Jian Peng, Joe DeBartolo, Karl F. Freed, Tobin R. Sosnick, Jinbo Xu. 59-73 [doi]
- Topology-Free Querying of Protein Interaction NetworksSharon Bruckner, Falk Hüffner, Richard M. Karp, Ron Shamir, Roded Sharan. 74-89 [doi]
- Cross Species Expression Analysis of Innate Immune ResponseYong Lu, Roni Rosenfeld, Gerard J. Nau, Ziv Bar-Joseph. 90-107 [doi]
- Haplotype Inference in Complex PedigreesBonnie Kirkpatrick, Javier Rosa, Eran Halperin, Richard M. Karp. 108-120 [doi]
- Storage and Retrieval of Individual GenomesVeli Mäkinen, Gonzalo Navarro, Jouni Sirén, Niko Välimäki. 121-137 [doi]
- An Online Approach for Mining Collective Behaviors from Molecular Dynamics SimulationsArvind Ramanathan, Pratul K. Agarwal, Maria Kurnikova, Christopher James Langmead. 138-154 [doi]
- Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems BiologyAlexandre Donzé, Gilles Clermont, Axel Legay, Christopher James Langmead. 155-169 [doi]
- Spatial Clustering of Multivariate Genomic and Epigenomic InformationRami Jaschek, Amos Tanay. 170-183 [doi]
- How Many Bootstrap Replicates Are Necessary?Nicholas D. Pattengale, Masoud Alipour, Olaf R. P. Bininda-Emonds, Bernard M. E. Moret, Alexandros Stamatakis. 184-200 [doi]
- A Robust Bayesian Two-Sample Test for Detecting Intervals of Differential Gene Expression in Microarray Time SeriesOliver Stegle, Katherine Denby, David L. Wild, Zoubin Ghahramani, Karsten M. Borgwardt. 201-216 [doi]
- Incorporating Nucleosomes into Thermodynamic Models of Transcription RegulationTali Raveh-Sadka, Michal Levo, Eran Segal. 217 [doi]
- Combinatorial Algorithms for Structural Variation Detection in High Throughput Sequenced GenomesFereydoun Hormozdiari, Can Alkan, Evan E. Eichler, Süleyman Cenk Sahinalp. 218-219 [doi]
- Optimizing PCR Assays for DNA Based Cancer DiagnosticsAli Bashir, Qing Lu, Dennis Carson, Benjamin J. Raphael, Yu-Tsueng Liu, Vineet Bafna. 220-235 [doi]
- The Multi-State Perfect Phylogeny Problem with Missing and Removable Data: Solutions via Integer-Programming and Chordal Graph TheoryDan Gusfield. 236-252 [doi]
- COE: A General Approach for Efficient Genome-Wide Two-Locus Epistasis Test in Disease Association StudyXiang Zhang, Feng Pan, Yuying Xie, Fei Zou, Wei Wang 0010. 253-269 [doi]
- Overlapping Pools for High Throughput Targeted ResequencingSnehit Prabhu, Itsik Pe er. 270 [doi]
- Deep Sequencing of a Genetically Heterogeneous Sample: Local Haplotype Reconstruction and Read Error CorrectionOsvaldo Zagordi, Lukas Geyrhofer, Volker Roth, Niko Beerenwinkel. 271-284 [doi]
- Lifting Prediction to Alignment of RNA PseudoknotsMathias Möhl, Sebastian Will, Rolf Backofen. 285-301 [doi]
- Detection of Locally Over-Represented GO Terms in Protein-Protein Interaction NetworksMathieu Lavallée-Adam, Benoit Coulombe, Mathieu Blanchette. 302-320 [doi]
- Protein Fragment Swapping: A Method for Asymmetric, Selective Site-Directed RecombinationWei Zheng, Karl E. Griswold, Chris Bailey-Kellogg. 321-338 [doi]
- Simultaneous Alignment and Folding of Protein SequencesJérôme Waldispühl, Charles W. O Donnell, Sebastian Will, Srinivas Devadas, Rolf Backofen, Bonnie Berger. 339-355 [doi]
- Shared Peptides in Mass Spectrometry Based Protein QuantificationBanu Dost, Nuno Bandeira, Xiangqian Li, Zhouxin Shen, Steve Briggs, Vineet Bafna. 356-371 [doi]
- Evaluating Between-Pathway Models with Expression DataBenjamin J. Hescott, Mark D. M. Leiserson, Lenore Cowen, Donna K. Slonim. 372-385 [doi]
- Sorting Signed Permutations by Inversions in O(nlogn) TimeKrister M. Swenson, Vaibhav Rajan, Yu Lin, Bernard M. E. Moret. 386-399 [doi]
- Finding Biologically Accurate Clusterings in Hierarchical Tree Decompositions Using the Variation of InformationSaket Navlakha, James Robert White, Niranjan Nagarajan, Mihai Pop, Carl Kingsford. 400-417 [doi]
- Identification and Frequency Estimation of Inversion Polymorphisms from Haplotype DataSuzanne S. Sindi, Benjamin J. Raphael. 418-433 [doi]
- On the Relationship between DNA Periodicity and Local Chromatin StructureSheila M. Reynolds, Jeff A. Bilmes, William Stafford Noble. 434-450 [doi]
- Phylogenies without Branch Bounds: Contracting the Short, Pruning the DeepConstantinos Daskalakis, Elchanan Mossel, Sébastien Roch. 451-465 [doi]
- Detecting the Presence and Absence of Causal Relationships between Expression of Yeast Genes with Very Few SamplesEun Yong Kang, Ilya Shpitser, Chun Ye, Eleazar Eskin. 466-481 [doi]
- An Adaptive and Memory Efficient Algorithm for Genotype ImputationHyun Min Kang, Noah Zaitlen, Buhm Han, Eleazar Eskin. 482-495 [doi]
- A Statistical Framework for the Functional Analysis of MetagenomesItai Sharon, Amrita Pati, Victor M. Markowitz, Ron Y. Pinter. 496-511 [doi]
- Learning Models for Aligning Protein Sequences with Predicted Secondary StructureEagu Kim, Travis J. Wheeler, John D. Kececioglu. 512-531 [doi]