Abstract is missing.
- Novel Driver Mutations in GCB Lymphoma Patients that Affect Transcription Factors BindingOfek Shami-Schnitzer, Tamir Tuller. 3-8 [doi]
- Inferring Phylogenetic Trees of Cancer Evolution from Longitudinal Single-Cell Copy Number ProfilesYushu Liu, Luay Nakhleh. 9-23 [doi]
- Tree Decomposition for Reconstructing Ancestral RNA Sequences of Multiple FamiliesSongdi Hu, Vladimir Reinharz, Olivier Tremblay Savard. 27-50 [doi]
- Whole-Genome Duplication Detection with Phylogenomics Reconciliation: A Scalable ApproachReza Kalhor, Manuel Lafond, Céline Scornavacca. 51-68 [doi]
- A Sankoff-Rousseau-Like Algorithm for Minimizing Lateral Gene Transfers and Losses on Single Origin CharactersAlitzel López Sánchez, Guillaume E. Scholz, Peter F. Stadler, Manuel Lafond. 69-86 [doi]
- tMHG-Finder: Tree-Guided Maximal Homologous Group Finder for Bacterial GenomesYongze Yin, Bryce Kille, Huw A. Ogilvie, Todd J. Treangen, Luay Nakhleh. 87-104 [doi]
- Phylogenetic Network Diversity Parameterized by Reticulation Number and BeyondLeo van Iersel, Mark Jones 0001, Jannik Schestag, Céline Scornavacca, Mathias Weller. 107-130 [doi]
- On the Robustness to Gene Tree Rooting (or Lack Thereof) of Triplet-Based Species Tree Estimation MethodsTanjeem Azwad Zaman, Rabib Jahin Ibn Momin, Md. Shamsuzzoha Bayzid. 131-136 [doi]
- Exact Counts of Binary Phylogenetic Networks with Two and Three Reticulation Events (Extended Abstract)Hao Yu, Louxin Zhang. 137-140 [doi]
- Ancestral Pangenomes and Their Phylogenetic ReconstructionXintong Zhou, David Sankoff. 141-149 [doi]
- QT-WEAVER: Correcting Quartet Distribution Improves Phylogenomic Analyses Despite Gene Tree Estimation ErrorNavid Bin Hasan, Sohaib, Md. Shamsuzzoha Bayzid. 150-156 [doi]
- Fast Calculation of Cherry Distance on Level-1 Orchard Networks: Optimization, Heuristic and ImplementationKaari Landry, Olivier Tremblay Savard. 157-177 [doi]
- Detecting and Mapping Local Model Violations During Biomolecular Sequence Analysis: a REsampling and Visual EvALuation ApproachMeijun Gao, Kevin J. Liu. 181-196 [doi]
- A Simple Way to Find Related Sequences with Position-Specific ProbabilitiesMartin C. Frith. 197-201 [doi]
- Position Specific Scoring Is All You Need? Revisiting Protein Sequence Classification TasksSarwan Ali, Taslim Murad, Prakash Chourasia, Haris Mansoor, Imdad Ullah Khan, Pin-Yu Chen, Murray Patterson. 202-215 [doi]
- Residual Immunity and Seasonality of an EpidemicSiyu Chen, David Sankoff. 219-230 [doi]
- Adapting the Cov2clusters Tool for Clustering MPOXV Whole Genome SequencesEric CH Chen, Tara Newman, John R. Tyson, Anthea Lam, Michael Chan, Agatha Jassem, Natalie Prystajecky, Shannon Russell, James Zlosnik. 231-243 [doi]
- Probability-Based Sequence Comparison Finds the Oldest Ever Nuclear Mitochondrial DNA Segments in Mammalian GenomesMuyao Huang, Martin C. Frith. 247-250 [doi]
- Unraveling Insect Immunity: A Cross-Order Comparative Genomic Analysis of Key Immune ProteinsTriveni Shelke, Vanika Gupta, Ishaan Gupta. 251-267 [doi]
- Analyzing Sequence Similarity Distributions in Salmonidae: A Branching Process ApproachYue Zhang. 268-283 [doi]
- Evolutionary Reconstruction of Hormone-bHLH Regulatory Networks in Solanaceae: Phylogenomics Insights from PSTVd-Tomato InteractionsKatia Aviña-Padilla, Octavio Zambada-Moreno, Manuel A. Barrios-Izás, Michelle Bustamante-Castillo, Maribel Hernández-Rosales. 284-291 [doi]