Table of Contents

• The Pistoia Alliance Pharma General Ontology: Experience using LinkML in PharmaJoshua Daniel Valdez, Philippe Rocca-Serra, Markus Hartmann, Darko Hric, Asiyah Yu Lin, Birgit Meldal, Peter McQuilton, Riccardo Mariani, Martin Romacker, Giovanni Nisato, Ben Gardner. 1-10 [doi]
• Biomedical Ontology Matching using Relational Graph Neural Networks and RDFs Meta-Path RulesShervin Mehryar, Julie Loesch, Emma Pinckers, Alan van den Akker, Yannick Damoiseaux, Athanasios Stavrinopoulos, Nikola Prianikov, Remzi Celebi. 11-20 [doi]
• Semantic Beacons: a framework to support federated querying over genomic variants and public Knowledge GraphsAlexandrina Bodrug-Schepers, Hugo Chabane, Gabriela Montoya, Patricia Serrano-Alvarado, Richard Redon, Alban Gaignard. 21-32 [doi]
• HERO-Genomics: An Ontology for Integration and Access of Multicenter Genomic DataMirco Cazzaro, Ivo Glynne Gut, Laura Menotti, Manuel Rueda, Gianmaria Silvello. 33-42 [doi]
• Enhancing GISMo: Integrating Recipe Contexts into a Graph-Based Ingredient Substitution ModuleJulie Loesch, David Schimmel, Funda Erdem, Deryanur Kalkavan, Zeki Bilgin, Remzi Celebi. 43-53 [doi]
• PubChemRDF on the Google Cloud PlatformSunghwan Kim 0002, Bo Yu 0016, Jia He 0008, Qingliang Li, Tiejun Cheng, Siqian He, Hannah Bast, Johannes Kalmbach, Evan E. Bolton. 54-66 [doi]
• Treating Query Graphs As Connecting Trees Mapping SPARQL Queries to FHIR APIEric Prud'hommeaux, Jerven T. Bolleman, Claude Nanjo. 67-74 [doi]
• FAIR Linked Data Framework for Glioblastoma ResearcZoi Katsirea, Samira Osterop, Valérie Dutoit, Tong Li, Etienne Doumazane, Stéphane Pagès, Omer Ali Bayraktar, Josh Moore, Andra Waagmeester, Tannia Gracia. 75-84 [doi]
• Quality issues on mappings between ICD10 and SNOMED CTEmiliano Reynares, Andrea Splendiani. 85-91 [doi]
• Imaging and curation of human TB lung tissue with linked dataGordon Wells, Kapongo D. Lumamba, Kievershen Nargan, Delon Naicker, Ashendree Govender, Rajhmun Madansein, Kameel Maharaj, Mpumelelo Msimang, Paul V. Benson, Threnesan Naidoo, Zoi Katsirea, Tannia Gracia, Fani Memi, Josh Moore, Andra Waagmeester, Adrie J. C. Steyn. 92-99 [doi]
• Judgment Day: Symbolic AI versus Neuro-Symbolic AI in a Usability Study with UK Junior DoctorsMercedes Argüello Casteleiro, Chloe Henson, Manoj Kulshrestha, Diego Maseda-Fernandez, Julio Des-Diz, Carlos Sevillano Torrado, Nava Maroto, Maria Jesus Fernandez Prieto, Timothy Furmston, Chris Wroe, John A. Keane, Robert Stevens 0001. 100-114 [doi]
• Trap of Time: Historical Common Names to Modern Taxonomy Mapping using LLMsJan Fillies, Naouel Karam, Alois Wieshuber, Giada Matheisen, Malte Rehbein, Belen Escobari, Sarah Fischer, Adrian Paschke. 115-120 [doi]
• A multi-modal and temporal antibiotic resistance knowledge graphBrieuc Quemeneur, Audrey Bihouée, Samuel Chaffron, Claudine Médigue, Hervé Ménager, Alban Gaignard. 121-125 [doi]
• Exploring Vendor-Neutral SMART on FHIR Infrastructure for Secure Data Exchange in Research and Patient CareKatja Hoffmann, Eveline Prochaska, Markus Wolfien, Martin Sedlmayr. 126-131 [doi]
• A Resolution-Alignment-Completeness System for Diagnosis Code Imputation in Clinical Knowledge GraphsShervin Mehryar, Özge Erten, Tsvetan Asamov, Svetla Boytcheva, Remzi Çelebi. 132-136 [doi]
• LLM-Based Ontology Mapping for Privacy-Preserving Healthcare Data ManagementMaria Papoutsoglou 0001, Apostolos Mavridis, Stergios Tegos, Christos Anastasiou, Georgios Meditskos. 137-142 [doi]
• Utilization of Semantic Technologies to Achieve Interoperability Between Dental Data and EHRs: A Proof of ConceptHugo Lebredo, Ruben del Rey Álvarez, José Emilio Labra Gayo. 143-147 [doi]
• Leveraging Zarr to handle RDF dataÁngel Iglesias Préstamo, Diego Martín Fernández, José Emilio Labra Gayo, Josh Moore. 148-152 [doi]
• RDF resources for biomedical researchMayumi Kamada, Shuichi Kawashima, Toshiaki Katayama. 153-156 [doi]
• From Clinical Data to Discovery: integration of Beacon v2 with OMOP-CDMSergi Aguiló-Castillo, Alberto Labarga, Miguel Angel Mayer, Juan Manuel Ramírez-Anguita, Oriol López-Doriga Sagales, Aurora Moreno-Racero, Liina Nagirnaja, Dmitry Repchevski, Salvador Capella-Gutiérrez, Jordi Rambla. 157-159 [doi]
• Merging and Validating Health Ontologies: A Framework for Ontological Integration and EvaluationSafaa Menad, Saïd Abdeddaïm, Lina Fatima Soualmia. 160-165 [doi]
• GlyCosmos: An Integrated Semantic Knowledge Base for GlycoscienceSunmyoung Lee, Yasunori Yamamoto, Achille Zappa, Kiyoko F. Aoki-Kinoshita. 166-171 [doi]
• Comparison of Cardiovascular Disease Trajectories: A France vs Nordic countries' perspective under the HealthData@EU EHDS projectGayo Diallo, Arti Rawat, Anna-Leena Vuorinen, Rachel B. Forster, Adrian G. Zucco, Tibor V. Varga, Andrea Ganna. 172-176 [doi]
• Leveraging AI Agents for Efficient Data AnnotationChang In Moon, Anh Nguyet Vu, Alex Verbitsky, Brian Dennis, Chris Harman, Mark Weston, Mohammed Eslami, Patrick Boutet, Christina Parry, Jineta Banerjee, John Hill, Jay Hodgson, Alberto Pepe, Milen Nikolov, Sonia Carlson, Robert J. Allaway. 177-179 [doi]
• QASAR: A quality assurance tool for semantic resourcesGonzalo Nicolás Martínez, Francisco Abad Navarro, Manuel Quesada-Martínez, Astrid Duque-Ramos, Belén Juanes-Cortés, Jesualdo Tomás Fernández-Breis. 180-182 [doi]
• MetaTron: Streamlining Collaborative Annotation for Biomedical DocumentsOrnella Irrera, Stefano Marchesin 0001, Gianmaria Silvello. 183-185 [doi]
• Demonstration: The MeDaX-KG on FHIRIlya Mazein, Tom Gebhardt, Sebastian Berthe, Kai Fitzer, Ron Henkel, Markus Mandalka, Seyed Reza Mazlooman, Lea Michaelis, Dagmar Waltemath, Benjamin Winter, Judith A. H. Wodke. 186-187 [doi]
• The Wheat and Rice Genomics Scientific Literature Knowledge GraphsNadia Yacoubi Ayadi, Franck Michel, Robert Bossy, Marine Courtin, Bill Gates Happi Happi, Pierre Larmande, Claire Nedellec, Catherine Faron. 188-190 [doi]
• Collaborative management of Semantic Web datasets: maintaining EuroSciVoc with VocBench and ShowVocAnikó Gerencsér, Baya Remaoun, Enrico Bignotti. 191-193 [doi]
• Using NFDI4Health Local Data Hub and Metadata-Schema for clinical research information managementFrank A. Meineke, Matthias Löbe, René Hänsel, Masoud Abedi, Xiaoming Hu, Martin Golebiewski. 194-196 [doi]
• Demonstrating Study Discovery and Exploration Through a Knowledge GraphLea Gütebier, Dagmar Waltemath, Ron Henkel. 197-198 [doi]
• Semantifying Genomic Variant Data: VCF to RDF Conversion FrameworkElias Crum, Ruben Taelman, Bart Buelens, Gökhan Ertaylan, Ruben Verborgh. 199-200 [doi]
• Integrating Data Treasures - The First Knowledge Graphs of the DSMZ Digital Diversity DatabasesJulia Koblitz, Lorenz Christian Reimer. 201-203 [doi]
• Predicting Clinical Remission in Crohn's Disease: A Comparative Study of Expert-Generated and Computer-Generated Bayesian NetworksYomi Okegunna, Maija Utriaine, Manon J. J. Cloots, Jiaxu Zhang, Iñigo Bermejo, Loriane M. M. Verleye, Marjolijn Duijvestein, Zlatan Mujagic, Andre Dekker, Marieke J. Pierik, Rianne Fijten. 204-206 [doi]
• Assessment of metadata descriptors of AI-ready datasetsJerven T. Bolleman, Leyla Jael Castro, Alban Gaignard, Agoritsa Kalampaliki, Edwin Jun Kiat Ong, Núria Queralt-Rosinach, Nelson David Quiñones Virgen, Rohitha Ravinder, Dhwani Solanki, David Steinberg, Claus Weiland, Daphne Wijnbergen. 207-209 [doi]
• Development of in-context methods with Large Language Models for statement validation: towards semi-automated ontology learning in novel biological contextsJames B. Wilsenach, Sebastian Ahnert. 210-212 [doi]
• Anonymization Ontology: A Privacy-Preserving Framework for GDPR-Compliant Anonymization of Personal Health DataNoopur Rai, Marta Dembska, Sirko Schindler. 213-215 [doi]
• FAIR principles: from seed supermarkets to germplasm data centersAlberto Cámara Ballesteros, Santiago Moreno Vazquez, Mark D. Wilkinson. 216 [doi]
• FAIR Software as a Service: Deployment of FAIR infra made easyRick Overkleeft, Sander van Boom, Eric Prud'hommeaux, Kees Burger, Jip Fransen, Marc Padros Goossens, Luiz Olavo Bonino da Silva Santos, Rajaram Kaliyaperumal, Marco Roos. 217-219 [doi]
• AgroLD: a Knowledge Graph for the Plant SciencesPierre Larmande, Bertrand Pitollat, Ndomassi Tando, Yann Pomie, Bill Gates Happi Happi, Valentin Guignon. 220-221 [doi]
• DATOS.CAT: Improving the level of the interoperability of GCAT in line with the FAIR principles with OntoBridge, dsOMOP and OMOP BeaconAikaterini Lymperidou, David Sarrat-González, Ramon Mateo-Navarro, Guillem Bracons Cucó, Aurora Moreno-Racero, Jordi Rambla De Argila, Liina Lagirnaja, Carles Hernandez-Ferrer, Salvador Capella-Gutiérrez, Santiago Andrés Frid, Juan R. González, Rafael de Cid. 222-223 [doi]
• An Automated Framework to generate pairs of Natural Language Questions and SPARQL Queries from Common RDF Graph PatternsJulio Cesar Rangel Reyes, Tarcisio Mendes de Farias, Yamamoto Yasunori, Ana Claudia Sima, Norio Kobayashi. 224-226 [doi]
• A Knowledge Graph for Enhanced Study Discovery and Semantic ExplorationLea Gütebier, Dagmar Waltemath, Ron Henkel. 227-229 [doi]
• OMExcavator: a tool for exporting and connecting domain-specific metadata in a wider knowledge graphStefan Dvoretskii, Michele Bortolomeazzi, Christian Schmidt, Josh Moore, Klaus H. Maier-Hein, Marco Nolden. 230-232 [doi]
• Towards dynamic consent and transparent access tracking for decentralized health records using the SOLID frameworkKalliopi Kastampolidou, Achilleas Chytas, Pantelis Natsiavas. 233-234 [doi]
• Lowering Barriers to FAIR Data: A User-Friendly Tool for Semantic Data TransformationKarolis Cremers, César Bernabé, Daphne Wijnbergen, Rosa Zwart, Anna Niehues, Marco Roos. 235-237 [doi]
• RDF Portal: Enhancing Accessibility and Interoperability of Life Science RDFShuichi Kawashima, Yasunori Yamamoto, Hirokazu Chiba, Yuki Moriya, Toshiaki Katayama. 238-239 [doi]
• FAIR in practice: minimum metadata schema for bioinformatics analytics by machinesDaphne Wijnbergen, Núria Queralt-Rosinach, Valérie Barbié, Emma Verkinderen, Nirupama Benis, Annika Jacobsen, Peter A. C. 't Hoen, Claudio Carta, Marco Roos, Eleni Mina. 240-241 [doi]
• Constructing a synonymous URI dictionary in life sciencesYasunori Yamamoto, Takatomo Fujisawa. 242-244 [doi]
• Extended RDF support for Biomedical Knowledge Graphs in pyBioDataFuse: on-the-fly RDF graph generation and new resource annotatorsJavier Millán Acosta, Egon L. Willighagen, Yojana Gadiya, Tooba Abbassi-Daloii. 245-248 [doi]