Abstract is missing.
- Simultaneous Relevant Feature Identification and Classification in High-Dimensional SpacesL. R. Grate, Chiranjib Bhattacharyya, Michael I. Jordan, I. Saira Mian. 1-9 [doi]
- Pooled Genomic Indexing (PGI): Mathematical Analysis and Experiment DesignMiklós Csürös, Aleksandar Milosavljevic. 10-28 [doi]
- Practical Algorithms and Fixed-Parameter Tractability for the Single Individual SNP Haplotyping ProblemRomeo Rizzi, Vineet Bafna, Sorin Istrail, Giuseppe Lancia. 29-43 [doi]
- Methods for Inferring Block-Wise Ancestral History from Haploid SequencesRussell Schwartz, Andrew G. Clark, Sorin Istrail. 44-59 [doi]
- Finding Signal Peptides in Human Protein Sequences Using Recurrent Neural NetworksMartin Reczko, Petko Fiziev, Eike Staub, Artemis G. Hatzigeorgiou. 60-67 [doi]
- Generating Peptide Candidates from Amino-Acid Sequence Databases for Protein Identification via Mass SpectrometryNathan Edwards, Ross Lippert. 68-81 [doi]
- Improved Approximation Algorithms for NMR Spectral Peak AssignmentZhi-Zhong Chen, Tao Jiang, Guo-Hui Lin, Jianjun Wen, Dong Xu, Ying Xu. 82-96 [doi]
- Efficient Methods for Inferring Tandem Duplication HistoryLouxin Zhang, Bin Ma, Lusheng Wang. 97-111 [doi]
- Genome Rearrangement Phylogeny Using WeighborLi-San Wang. 112-125 [doi]
- Segment Match Refinement and ApplicationsAaron L. Halpern, Daniel H. Huson, Knut Reinert. 126-139 [doi]
- Extracting Common Motifs under the Levenshtein Measure: Theory and ExperimentationEzekiel F. Adebiyi, Michael Kaufmann. 140-156 [doi]
- Fast Algorithms for Finding Maximum-Density Segments of a Sequence with Applications to BioinformaticsMichael H. Goldwasser, Ming-Yang Kao, Hsueh-I Lu. 157-171 [doi]
- FAUST: An Algorithm for Extracting Functionally Relevant Templates from Protein StructuresMariusz Milik, Sándor Szalma, Krzysztof A. Olszewski. 172-184 [doi]
- Efficient Unbound Docking of Rigid MoleculesDina Duhovny, Ruth Nussinov, Haim J. Wolfson. 185-200 [doi]
- A Method of Consolidating and Combining EST and mRNA Alignments to a Genome to Enumerate Supported Splice VariantsRaymond Wheeler. 201-209 [doi]
- A Method to Improve the Performance of Translation Start Site Detection and Its Application for Gene FindingMihaela Pertea, Steven Salzberg. 210-219 [doi]
- Comparative Methods for Gene Structure Prediction in Homologous SequencesChristian N. S. Pedersen, Tejs Scharling. 220-234 [doi]
- MultiProt - A Multiple Protein Structural Alignment AlgorithmMaxim Shatsky, Ruth Nussinov, Haim J. Wolfson. 235-250 [doi]
- A Hybrid Scoring Function for Protein Multiple AlignmentEmily Rocke. 251-262 [doi]
- Functional Consequences in Metabolic Pathways from Phylogenetic ProfilesYonatan Bilu, Michal Linial. 263-276 [doi]
- Finding Founder Sequences from a Set of RecombinantsEsko Ukkonen. 277-286 [doi]
- Estimating the Deviation from a Molecular ClockLuay Nakhleh, Usman Roshan, Lisa Vawter, Tandy Warnow. 287-299 [doi]
- Exploring the Set of All Minimal Sequences of Reversals - An Application to Test the Replication-Directed Reversal HypothesisYasmine Ajana, Jean-François Lefebvre, Elisabeth R. M. Tillier, Nadia El-Mabrouk. 300-315 [doi]
- Approximating the Expected Number of Inversions Given the Number of BreakpointsNiklas Eriksen. 316-330 [doi]
- Invited Lecture - Accelerating Smith-Waterman SearchesGene Myers, Richard Durbin. 331-342 [doi]
- Sequence-Length Requirements for Phylogenetic MethodsBernard M. E. Moret, Usman Roshan, Tandy Warnow. 343-356 [doi]
- Fast and Accurate Phylogeny Reconstruction Algorithms Based on the Minimum-Evolution PrincipleRichard Desper, Olivier Gascuel. 357-374 [doi]
- NeighborNet: An Agglomerative Method for the Construction of Planar Phylogenetic NetworksDavid Bryant, Vincent Moulton. 375-391 [doi]
- On the Control of Hybridization Noise in DNA Sequencing-by-HybridizationHon Wai Leong, Franco P. Preparata, Wing-Kin Sung, Hugo Willy. 392-403 [doi]
- Restricting SBH Ambiguity via Restriction EnzymesSteven Skiena, Sagi Snir. 404-417 [doi]
- Invited Lecture - Molecule as Computation: Towards an Abstraction of Biomolecular SystemsEhud Y. Shapiro. 418 [doi]
- Fast Optimal Genome Tiling with Applications to Microarray Design and Homology SearchPiotr Berman, Paul Bertone, Bhaskar DasGupta, Mark Gerstein, Ming-Yang Kao, Michael Snyder. 419-433 [doi]
- Rapid Large-Scale Oligonucleotide Selection for MicroarraysSven Rahmann. 434 [doi]
- Border Length Minimization in DNA Array DesignAndrew B. Kahng, Ion I. Mandoiu, Pavel A. Pevzner, Sherief Reda, Alexander Zelikovsky. 435-448 [doi]
- The Enhanced Suffix Array and Its Applications to Genome AnalysisMohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch. 449-463 [doi]
- The Algorithmic of Gene TeamsAnne Bergeron, Sylvie Corteel, Mathieu Raffinot. 464-476 [doi]
- Combinatorial Use of Short Probes for Differential Gene Expression ProfilingLiling L. Warren, Ben Hui Liu. 477-490 [doi]
- Designing Specific Oligonucleotide Probes for the Entire S. cerevisiae TranscriptomeDoron Lipson, Peter Webb, Zohar Yakhini. 491-505 [doi]
- K-ary Clustering with Optimal Leaf Ordering for Gene Expression DataZiv Bar-Joseph, Erik D. Demaine, David K. Gifford, Angèle M. Hamel, Tommi Jaakkola, Nathan Srebro. 506-520 [doi]
- Inversion Medians Outperform Breakpoint Medians in Phylogeny Reconstruction from Gene-Order DataBernard M. E. Moret, Adam C. Siepel, Jijun Tang, Tao Liu. 521-536 [doi]
- Modified Mincut SupertreesRoderic D. M. Page. 537-552 [doi]