Abstract is missing.
- Measures of Codon Bias in Yeast, the tRNA Pairing Index and Possible DNA Repair MechanismsMarkus T. Friberg, Pedro Gonnet, Yves Barral, Nicol N. Schraudolph, Gaston H. Gonnet. 1-11 [doi]
- Decomposing Metabolomic Isotope PatternsSebastian Böcker, Matthias C. Letzel, Zsuzsanna Lipták, Anton Pervukhin. 12-23 [doi]
- A Method to Design Standard HMMs with Desired Length Distribution for Biological Sequence AnalysisHongmei Zhu, Jiaxin Wang, Zehong Yang, Yixu Song. 24-31 [doi]
- Efficient Model-Based Clustering for LC-MS DataMarta Luksza, Boguslaw Kluge, Jerzy Ostrowski, Jakub Karczmarski, Anna Gambin. 32-43 [doi]
- A Bayesian Algorithm for Reconstructing Two-Component Signaling NetworksLukas Burger, Erik van Nimwegen. 44-55 [doi]
- Linear-Time Haplotype Inference on Pedigrees Without RecombinationsBethany Man-Yee Chan, Joseph Wun-Tat Chan, Francis Y. L. Chin, Stanley P. Y. Fung, Ming-Yang Kao. 56-67 [doi]
- Phylogenetic Network Inferences Through Efficient HaplotypingYinglei Song, Chunmei Liu, Russell L. Malmberg, Liming Cai. 68-79 [doi]
- Beaches of Islands of Tractability: Algorithms for Parsimony and Minimum Perfect Phylogeny Haplotyping ProblemsLeo van Iersel, Judith Keijsper, Steven Kelk, Leen Stougie. 80-91 [doi]
- On the Complexity of SNP Block Partitioning Under the Perfect Phylogeny ModelJens Gramm, Tzvika Hartman, Till Nierhoff, Roded Sharan, Till Tantau. 92-102 [doi]
- How Many Transcripts Does It Take to Reconstruct the Splice Graph?Paul Jenkins, Rune B. Lyngsø, Jotun Hein. 103-114 [doi]
- Multiple Structure Alignment and Consensus Identification for ProteinsJieping Ye, Ivaylo Ilinkin, Ravi Janardan, Adam Isom. 115-125 [doi]
- Procrastination Leads to Efficient Filtration for Local Multiple AlignmentAaron E. Darling, Todd J. Treangen, Louxin Zhang, Carla Kuiken, Xavier Messeguer, Nicole T. Perna. 126-137 [doi]
- Controlling Size When Aligning Multiple Genomic Sequences with DuplicationsMinmei Hou, Piotr Berman, Louxin Zhang, Webb Miller. 138-149 [doi]
- Reducing Distortion in Phylogenetic NetworksDaniel H. Huson, Mike A. Steel, Jim Whitfield. 150-161 [doi]
- Imputing Supertrees and Supernetworks from QuartetsBarbara Holland, Glenn Conner, Katharina T. Huber, Vincent Moulton. 162 [doi]
- A Unifying View of Genome RearrangementsAnne Bergeron, Julia Mixtacki, Jens Stoye. 163-173 [doi]
- Efficient Sampling of Transpositions and Inverted Transpositions for Bayesian MCMCIstván Miklós, Timothy Brooks Paige, Péter Ligeti. 174-185 [doi]
- Alignment with Non-overlapping Inversions in ::::O::::(::::n:::::::3:::)-TimeAugusto F. Vellozo, Carlos E. R. Alves, Alair Pereira do Lago. 186-196 [doi]
- Accelerating Motif Discovery: Motif Matching on Parallel HardwareGeir Kjetil Sandve, Magnar Nedland, Øyvind Bø Syrstad, Lars Andreas Eidsheim, Osman Abul, Finn Drabløs. 197-206 [doi]
- Segmenting Motifs in Protein-Protein Interface SurfacesJeff M. Phillips, Johannes Rudolph, Pankaj K. Agarwal. 207-218 [doi]
- Protein Side-Chain Placement Through MAP Estimation and Problem-Size ReductionEun-Jong Hong, Tomás Lozano-Pérez. 219-230 [doi]
- On the Complexity of the Crossing Contact Map Pattern Matching ProblemShuai Cheng Li, Ming Li. 231-241 [doi]
- A Fuzzy Dynamic Programming Approach to Predict RNA Secondary StructureDandan Song, Zhidong Deng. 242-251 [doi]
- Landscape Analysis for Protein-Folding Simulation in the H-P ModelKathleen Steinhöfel, Alexandros Skaliotis, Andreas Alexander Albrecht. 252-261 [doi]
- Rapid ::::ab initio:::: RNA Folding Including Pseudoknots Via Graph Tree DecompositionJizhen Zhao, Russell L. Malmberg, Liming Cai. 262-273 [doi]
- Flux-Based ::::vs.:::: Topology-Based Similarity of Metabolic GenesOleg Rokhlenko, Tomer Shlomi, Roded Sharan, Eytan Ruppin, Ron Y. Pinter. 274-285 [doi]
- Combinatorial Methods for Disease Association Search and Susceptibility PredictionDumitru Brinza, Alexander Zelikovsky. 286-297 [doi]
- Integer Linear Programs for Discovering Approximate Gene ClustersSven Rahmann, Gunnar W. Klau. 298-309 [doi]
- Approximation Algorithms for Bi-clustering ProblemsLusheng Wang, Yu Lin, Xiaowen Liu. 310-320 [doi]
- Improving the Layout of Oligonucleotide Microarrays: Pivot PartitioningSérgio A. de Carvalho, Sven Rahmann. 321-332 [doi]
- Accelerating the Computation of Elementary Modes Using Pattern TreesMarco Terzer, Jörg Stelling. 333-343 [doi]
- A Linear-Time Algorithm for Studying Genetic VariationNikola Stojanovic, Piotr Berman. 344-354 [doi]
- New Constructive Heuristics for DNA Sequencing by HybridizationChristian Blum, Mateu Yábar Vallès. 355-365 [doi]
- Optimal Probing Patterns for Sequencing by HybridizationDekel Tsur. 366-375 [doi]
- Gapped Permutation Patterns for Comparative GenomicsLaxmi Parida. 376-387 [doi]
- Segmentation with an Isochore DistributionMiklós Csürös, Ming-Te Cheng, Andreas Grimm, Amine Halawani, Perrine Landreau. 388-399 [doi]