Abstract is missing.
- A Tree Index to Support Clustering Based Exploratory Data AnalysisChristian Martin, Tim W. Nattkemper. 1-15 [doi]
- XMAS: An Experiential Approach for Visualization, Analysis, and Exploration of Time Series Microarray DataBen Dalziel, Hui Yang, Rahul Singh, Matthew Gormley, Susan Fisher. 16-31 [doi]
- Clustering in a Fixed Manifold to Detect Groups of Genes with Similar Expression PatternsNguyen Phuong, Hoang Tuan. 32-42 [doi]
- Families of FPGA-Based Accelerators for BLAST Algorithm with Multi-seeds Detection and Parallel ExtensionFei Xia, Yong Dou, Jiaqing Xu. 43-57 [doi]
- Fast Structured Motif Search in DNA SequencesMihail Halachev, Nematollaah Shiri. 58-73 [doi]
- A Discriminative Method for Protein Remote Homology Detection Based on N-nary ProfilesBin Liu, Lei Lin, Xiaolong Wang, Qiwen Dong, Xuan Wang. 74-86 [doi]
- Searching for Supermaximal Repeats in Large DNA SequencesChen Na Lian, Mihail Halachev, Nematollaah Shiri. 87-101 [doi]
- Motif Location Prediction by Divide and ConquerMohammed Al-Shalalfa, Reda Alhajj. 102-113 [doi]
- Translational Control by RNA-RNA Interaction: Improved Computation of RNA-RNA Binding ThermodynamicsUlrike Mückstein, Hakim Tafer, Stephan H. F. Bernhart, Maribel Hernandez-Rosales, Jörg Vogel, Peter F. Stadler, Ivo L. Hofacker. 114-127 [doi]
- A Symmetry-Free Subspace for Ab initioProtein Folding SimulationsXiangchao Gan, Leonidas Kapsokalivas, Andreas Alexander Albrecht, Kathleen Steinhöfel. 128-139 [doi]
- Comparative Analysis of Disulfide Bond Determination Using Computational-Predictive Methods and Mass Spectrometry-Based Algorithmic ApproachTimothy Lee, Rahul Singh. 140-153 [doi]
- Exploration of Evolutionary Relations between Protein StructuresNatalja Kurbatova, Juris Viksna. 154-166 [doi]
- Two Local Search Methods for Protein Folding Simulation in the HP and the MJ Lattice ModelsLeonidas Kapsokalivas, Xiangchao Gan, Andreas Alexander Albrecht, Kathleen Steinhöfel. 167-179 [doi]
- A Robust Class of Stable Proteins in the 2D HPC ModelAlireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey, Arvind Gupta. 180-192 [doi]
- A Novel Adaptive Multiple Imputation AlgorithmVeselka Boeva, Elena Tsiporkova. 193-206 [doi]
- Topological Metrics in Blast Data Mining: Plasmid and Nitrogen-Fixing Proteins Case StudiesPietro Liò, Matteo Brilli, Renato Fani. 207-220 [doi]
- Gene Expression Mining for Cohesive Pattern DiscoveryRamkishore Bhattacharyya, Balaram Bhattacharyya. 221-234 [doi]
- Identifying Subcellular Locations from Images of Unknown ResolutionLuís Pedro Coelho, Robert F. Murphy. 235-242 [doi]
- E-BioFlow: Different Perspectives on Scientific WorkflowsIngo H. C. Wassink, Han Rauwerda, Paul E. van der Vet, Timo M. Breit, Anton Nijholt. 243-257 [doi]
- Knowledge Acquisition Focused Cooperative Development of Bio-ontologies - A Case Study with BIO2MeDominic Mainz, Ingo Paulsen, Indra Mainz, Katrin Weller, Jochen Kohl, Arndt von Haeseler. 258-272 [doi]
- Nested q-Partial Graphs for Genetic Network Inference from Small n, Large p Microarray DataKevin Kontos, Gianluca Bontempi. 273-287 [doi]
- A Computational Method for Reconstructing Gapless Metabolic NetworksEsa Pitkänen, Ari Rantanen, Juho Rousu, Esko Ukkonen. 288-302 [doi]
- Finding Frequent Subgraphs in Biological Networks Via Maximal Item SetsHans Zantema, Stefan Wagemans, Dragan Bosnacki. 303-317 [doi]
- Multi-functional Protein Clustering in PPI Networks Clara Pizzuti, Simona E. Rombo. 318-330 [doi]
- Protein-Protein Interaction Network Querying by a Focus and Zoom ApproachValeria Fionda, Luigi Palopoli, Simona Panni, Simona E. Rombo. 331-346 [doi]
- Matching Spatial Regions with Combinations of Interacting Gene Expression PatternsJano I. van Hemert, Richard A. Baldock. 347-361 [doi]
- Combining Molecular and Physiological Data of Complex DisordersEmanuel Schwarz, F. Markus Leweke, Sabine Bahn, Pietro Liò. 362-376 [doi]
- Combining Protein-Protein Interaction (PPI) Network and Sequence Attributes for Predicting Hypertension Related ProteinsRichard J. B. Dobson, Patricia B. Munroe, Charles A. Mein, Mark J. Caulfield, Mansoor A. S. Saqi. 377-391 [doi]
- Genome Structure and Characterisation of an Endogenous Retrovirus from the Zebrafish Genome Project DatabaseRoziah Kambol, M. Faris Abtholuddin. 392-403 [doi]
- Bayesian Phylogeny on GridRichard C. van der Wath, Elizabeth van der Wath, Antonio Carapelli, Francesco Nardi, Francesco Frati, Luciano Milanesi, Pietro Liò. 404-416 [doi]
- Comparison of Exact String Matching Algorithms for Biological SequencesPetri Kalsi, Hannu Peltola, Jorma Tarhio. 417-426 [doi]
- A New Approximation Algorithm for the Minimum Fragment Removal ProblemHatem Tahri, Mourad Elloumi. 427-435 [doi]
- Indexing Factors in DNA/RNA SequencesTomás Flouri, Costas S. Iliopoulos, Mohammad Sohel Rahman, Ladislav Vagner, Michal Vorácek. 436-445 [doi]
- Implementation of a Swap Matching Algorithm Using a Graph Theoretic ModelPavlos Antoniou, Costas S. Iliopoulos, Inuka Jayasekera, M. Sohel Rahman. 446-455 [doi]
- Suffix Tree Characterization of Maximal Motifs in Biological SequencesMaria Federico, Nadia Pisanti. 456-465 [doi]
- Efficient Seeding Techniques for Protein Similarity SearchMikhail A. Roytberg, Anna Gambin, Laurent Noé, Slawomir Lasota, Eugenia Furletova, Ewa Szczurek, Gregory Kucherov. 466-478 [doi]
- An Algorithm for Multiple and Global AlignmentsMourad Elloumi, Ahmed Mokaddem. 479-488 [doi]
- LASA: A Tool for Non-heuristic Alignment of Multiple SequencesErnst Althaus, Stefan Canzar. 489-498 [doi]
- SVM-Based Local Search for Gene Selection and Classification of Microarray DataJose Crispin Hernandez Hernandez, Béatrice Duval, Jin-Kao Hao. 499-508 [doi]
- GENFOCS - A Comparative Tool on Gene Finding with Sensitivity and SpecificityM. A. Lijo Anto, G. Gopakumar, Achuthsankar S. Nair, Indira Ghosh. 509-516 [doi]
- Gene Machine© - A Hardware/Software Platform for Analyzing Genome DataRoger Marshall. 517-527 [doi]
- Complex Representation of DNA SequencesCarlo Cattani. 528-537 [doi]
- Wavelet Analysis of Impulses in Axon PhysiologyCarlo Cattani, Massimo Scalia. 538-545 [doi]
- Acquisition and Algorithms for Fluorescence ApplicationsElena Mocanu, Paul E. Sterian. 546-555 [doi]
- Control of the Lasers Dynamics by Pumping Modulation for Biophotonics ApplicationsPaul E. Sterian, Octavian Marin, Valerica Ninulescu. 556-562 [doi]
- Quantum Well Lasers for Medical IndustryValerica Ninulescu, Vladua-Bogdan Nicolae, Andreea Sterian. 563-570 [doi]
- Computational Model for the Study of the Fractal Parameters Characteristic for the Surface of Titanium Dental ImplantsStefan Pusca, Theodora Toma. 571-580 [doi]
- VEMS-TM - A Management InfrastructureTrandafir Moisa, Cristian Morarescu. 581-586 [doi]
- PTF Model for Evaluating the Relationships between the VAC and Antimicrobial Resistance in Human CommunitiesIrina Codita, Stefan Pusca. 587-593 [doi]