Abstract is missing.
- BioMixer: Visualizing Mappings of Biomedical OntologiesElena Voyloshnikova, Bo Fu, Lars Grammel, Margaret-Anne D. Storey. [doi]
- Recommending Concepts to Experts: An Exploration of Recommender Techniques for Collaborative Ontology Engineering Platforms in the Biomedical DomainSimon Walk, Markus Strohmaier, Tania Tudorache, Natalya Fridman Noy, Csongor Nyulas, Mark A. Musen. [doi]
- The NEMO Analysis Pipeline: EEG Pattern Extraction and Ontology-based ClassificationGwen A. Frishkoff, Robert M. Frank. [doi]
- Revisiting ontological foundations of the OpenEHR Entry ModelAndré Queiroz de Andrade, Mauricio Barcellos Almeida, Stefan Schulz. [doi]
- Semantic query expansion for fuzzy proximity information retrieval modelBissan Audeh. [doi]
- Wanting what we don't want to want: Representing addiction in interoperable bio-ontologiesJanna Hastings, Nicolas Le Novère, Werner Ceusters, Kevin Mulligan, Barry Smith. [doi]
- Nutriknow: a comprehensive foods-for-health knowledge repositoryMatthew C. Lange. [doi]
- Modular Extensions to the ChEBI OntologyJanna Hastings, Paula de Matos, Adriano Dekker, Marcus Ennis, Venkatesh Muthukrishnan, Steve Turner, Gareth Owen, Christoph Steinbeck. [doi]
- Role-based representation and inference of biochemical processesChristian Boelling, Michel Dumontier, Michael Weidlich, Hermann-Georg Holzhütter. [doi]
- BioMixer: A Web-based Collaborative Ontology Visualization ToolBo Fu, Lars Grammel, Margaret-Anne D. Storey. [doi]
- Taking a view on bio-ontologiesSimon Jupp, Andrew Gibson, James Malone, Robert Stevens. [doi]
- Developing the Animals in Context OntologySuzanne L. Santamaria, Maureen Fallon, Julie M. Green, Stefan Schulz, Jeffrey R. Wilcke. [doi]
- Checking Class Labels against Naming Conventions: First experiences with the OntoCheck Protégé pluginDaniel Schober, Vojtech Svátek, Martin Boeker. [doi]
- ADO: A formal ontology for understanding structure of information and domain knowledge of Alzheimer's diseaseAshutosh Malhotra, Michaela Gündel, Martin Hofmann-Apitius. [doi]
- Representing biomedical knowledge: A view from the philosophy of scienceAleksandra Sojic, Oliver Kutz. [doi]
- Knowledge Acquisition in the construction of ontologies: a case study in the domain of hematologyFabrício Mendonça, Kátia Coelho, André Queiroz de Andrade, Mauricio Barcellos Almeida. [doi]
- An Ontology of GeneHiroshi Masuya, Riichiro Mizoguchi. [doi]
- ClinicalKey: Terminology driven Semantic SearchSivaram Arabandi, Helen Moran. [doi]
- NCBO-Galaxy: bridging the BioPortal web services and the Galaxy platformJosé Antonio Miñarro-Giménez, Mikel Egaña Aranguren, Jesualdo Tomás Fernández-Breis, Erick Antezana. [doi]
- IDODEN: An Ontology for DengueElvira Mitraka, Pantelis Topalis, Emmanuel Dialynas, Vicky Dritsou, Christos Louis. [doi]
- Teaching Good Biomedical Ontology DesignMartin Boeker, Daniel Schober, Djamila Raufie, Niels Grewe, Johannes Röhl, Ludger Jansen, Stefan Schulz. [doi]
- The SWO Project: A Case Study for Applying Agile Ontology Engineering Methods for Community Driven OntologiesMaria Copeland, Andy Brown, Helen E. Parkinson, Robert Stevens, James Malone. [doi]
- Towards an integrated knowledge system for capturing gene expression eventsAravind Venkatesan, Vladimir Mironov, Martin Kuiper. [doi]
- Proposed Ontology for Seizure and EpilepsyRobert Yao, Jeffrey Buchhalter, Graciela Gonzalez. [doi]
- Requirements and Strategy for the Development of a Pediatric Drug OntologyRachel L. Richesson, Jyotishman Pathak, Wendy McLeod, Ginger Blackmon, Kendra Vehik. [doi]
- The Epidemic Marketplace Platform: towards semantic characterization of epidemiological resources using biomedical ontologiesFrancisco M. Couto, João D. Ferreira, João Zamite, Carlos Santos, Tiago Posse, Paulo Graça, Dulce Domingos, Mário J. Silva. [doi]
- An Ontology of Software EvolutionXiaowei Wang. [doi]
- Representation of Part-Whole Relationships in SNOMED CTPatrice Seyed, Alan L. Rector, Uli Sattler, Bijan Parsia, Robert Stevens. [doi]
- Quality ontology engineering based on thesauriDaniel Kless. [doi]
- Interpreting Patient Data using Medical Background KnowledgeHeiner Oberkampf, Sonja Zillner, Bernhard Bauer.. [doi]
- The Issue of Perspectivality in Formal Theories of Spatial RepresentationMarion Haemmerli. [doi]
- An ontologically well-founded framework for modelling Business Organizations, Processes and ServicesAlessander Botti Benevides. [doi]
- OntoVerbal: a Protégé plugin for verbalising ontology classesShao Fen Liang, Robert Stevens, Donia Scott, Alan L. Rector. [doi]
- Using Biomedical Ontologies for Data Representation and Management in the Mouse Genome Informatics (MGI) SystemLi Ni, Carol J. Bult, James A. Kadin, Joel E. Richardson, Martin Ringwald, Janan T. Eppig, Judith A. Blake. [doi]
- Bringing epidemiology into the Semantic WebJoão D. Ferreira, Catia Pesquita, Francisco M. Couto, Mário J. Silva. [doi]
- Ontology customization for biomedical informaticsPablo López-García. [doi]
- Using a Reference Ontology with Semantic Similarity in Ontology AlignmentValerie Cross, Pramit Silwal, David Morell. [doi]
- Analyzing Tools for Biomedical Text Annotation with Multiple OntologiesKele T. Belloze, Daniel Igor S. B. Monteiro, Tulio F. Lima, Floriano P. Silva Jr., Maria Cláudia Cavalcanti. [doi]
- The ontological challenge of lateralityJörg Niggemann. [doi]
- A Method for Evaluating OntologiesPatrice Seyed. [doi]
- Exploitation of ontologies for the management of clinical archetypes in ArchMSMaría Del Carmen Legaz-García, Catalina Martínez-Costa, Marcos Menárguez Tortosa, Jesualdo Tomás Fernández-Breis. [doi]
- Ontodog: A Web-based Ontology Community View GeneratorJie Zheng, Zuoshuang Xiang, Christian J. Stoeckert Jr., Yongqun He. [doi]
- Ontorat web server for automatic generation and annotations of new ontology termsZuoshuang Xiang, Yu Lin, Yongqun He. [doi]
- RIO: The Regularities Inspector for Ontologies Plugin for Protégé-4Eleni Mikroyannidi, Luigi Iannone, Robert Stevens. [doi]
- Knowledge representation in Health Research: the modeling of Adverse Events Following ImmunizationMélanie Courtot. [doi]
- Adverse events following immunization: reporting standardization, automatic case classification and signal detectionMélanie Courtot, Ryan R. Brinkman, Alan Ruttenberg. [doi]
- Constructing a Lattice of Infectious Disease Ontologies from a Staphylococcus aureus Isolate RepositoryAlbert Goldfain, Lindsay G. Cowell, Barry Smith. [doi]
- Identifying Chemical Entities based on ChEBITiago Grego, Francisco R. Pinto, Francisco M. Couto. [doi]
- GOCI: An Ontology-Driven Search and Curation Infrastructure for the NHGRI GWAS CatalogDanielle Welter, Tony Burdett, Lucia Hindorff, Heather Junkins, Jackie MacArthur, Helen E. Parkinson. [doi]
- miRNAO: An Ontology for microRNAsVicky Dritsou, Pantelis Topalis, Emmanuel Dialynas, Elvira Mitraka, Christos Louis. [doi]
- The Pharmacology Workspace: A Platform for Drug DiscoveryAlasdair J. G. Gray, Sune Askjaer, Christian Y. A. Brenninkmeijer, Kees Burger, Christine Chichester, James Eales, Chris T. A. Evelo, Carole A. Goble, Paul T. Groth, Lee Harland, Antonis Loizou, Steve Pettifer, Rishi Ramgolam, Mark Thompson, Andra Waagmeester, Antony J. Williams. [doi]
- OWL Representation of Drug Activities on Biological SystemsSamuel Croset. [doi]
- Waves and fields in bio-ontologiesColin R. Batchelor, Janna Hastings. [doi]
- A plant disease extension of the Infectious Disease OntologyRamona Walls, Barry Smith, Justin Elser, Albert Goldfain, Dennis W. Stevenson, Pankaj Jaiswal. [doi]
- Mapping of glossary terms from the Flora of North America to the Plant Ontology enhances both resourcesRamona Walls, Hong Cui, James A. Macklin, Chris Mungall, Laurel Cooper, Dennis W. Stevenson, Pankaj Jaiswal. [doi]
- Efforts toward a More Consistent and Interoperable Sequence OntologyMichael Bada, Karen Eilbeck. [doi]
- The CEN ISO Standard Categorial Structure as a Top-Level Set of Constraints for Ontology DisambiguationJean Marie Rodrigues, Stefan Schulz, Cédric Bousquet, Julien Souvignet. [doi]
- Smart Searching System for Biomedical InformationHong-Woo Chun, Chang-Hoo Jeong, Sa-Kwang Song, Yunsoo Choi, Sung-Pil Choi, Hanmin Jung. [doi]
- Identity Tracking of a Disease as a Causal ChainKouji Kozaki, Riichiro Mizoguchi, Takeshi Imai, Kazuhiko Ohe. [doi]
- Discovering Cross-Ontology Subsumption Relationships by Using Ontological Annotations on Biomedical LiteratureWatson Wei Khong Chua, Jung-jae Kim. [doi]
- Representing Core Themes in a Biology E-TextbookNikhil Dinesh. [doi]