Table of Contents

• Teaching High-Performance Computing on a High-Performance ClusterMartin Bernreuther, Markus Brenk, Hans-Joachim Bungartz, Ralf-Peter Mundani, Ioan Lucian Muntean. 1-9 [doi]
• Teaching High Performance Computing Parallelizing a Real Computational Science ApplicationGiovanni Aloisio, Massimo Cafaro, Italo Epicoco, Gianvito Quarta. 10-17 [doi]
• Introducing Design Patterns, Graphical User Interfaces and Threads Within the Context of a High Performance Computing ApplicationJames Roper, Alistair P. Rendell. 18-26 [doi]
• High Performance Computing Education for Students in Computational EngineeringUwe Fabricius, Christoph Freundl, Harald Köstler, Ulrich Rüde. 27-35 [doi]
• Integrating Teaching and Research in HPC: Experiences and OpportunitiesMartin Berzins, Robert M. Kirby, Cullen R. Johnson. 36-43 [doi]
• Education and Research Challenges in Parallel ComputingL. Ridgway Scott, Terry W. Clark, Babak Bagheri. 44-51 [doi]
• Academic Challenges in Large-Scale Multiphysics SimulationsMichael T. Heath, Xiangmin Jiao. 52-59 [doi]
• Balancing Computational Science and Computer Science Research on a Terascale Computing FacilityCalvin J. Ribbens, Srinidhi Varadarajan, Malarvizhi Chinnusamy, Gautam Swaminathan. 60-67 [doi]
• Computational Options for Bioinformatics Research in Evolutionary BiologyMichael A. Thomas, Mitch D. Day, Luobin Yang. 68-75 [doi]
• Financial Computations on Clusters Using Web ServicesShirish Chinchalkar, Thomas F. Coleman, Peter Mansfield. 76-83 [doi]
• Plug-and-Play Cluster Computing HPC Designed for the Mainstream ScientistDean E. Dauger, Viktor K. Decyk. 84-90 [doi]
• Building an HPC Watering Hole for Boulder Area Computational ScienceElizabeth R. Jessup, Henry M. Tufo, Matthew Woitaszek. 91-98 [doi]
• The Dartmouth Green GridJames E. Dobson, Jeffrey B. Woodward, Susan A. Schwarz, John Marchesini, Hany Farid, Sean W. Smith. 99-106 [doi]
• Resource-Aware Parallel Adaptive Computation for ClustersJames D. Teresco, Laura Effinger-Dean, Arjun Sharma. 107-115 [doi]
• New Algorithms for Performance Trace Analysis Based on Compressed Complete Call GraphsAndreas Knüpfer, Wolfgang E. Nagel. 116-123 [doi]
• PARADIS: Analysis of Transaction-Based Applications in Distributed EnvironmentsChristian Glasner, Edith Spiegl, Jens Volkert. 124-131 [doi]
• Automatic Tuning of Data Distribution Using Factoring in Master/Worker ApplicationsAnna Morajko, Paola Caymes-Scutari, Tomàs Margalef, Emilio Luque. 132-139 [doi]
• DynTG: A Tool for Interactive, Dynamic InstrumentationMartin Schulz, John May, John C. Gyllenhaal. 140-148 [doi]
• Rapid Development of Application-Specific Network Performance TestsScott Pakin. 149-157 [doi]
• Providing Interoperability for Java-Oriented Monitoring Tools with JINEXTWlodzimierz Funika, Arkadiusz Janik. 158-165 [doi]
• RDVIS: A Tool that Visualizes the Causes of Low Locality and Hints Program OptimizationsKristof Beyls, Erik H. D Hollander, Frederik Vandeputte. 166-173 [doi]
• CacheIn: A Toolset for Comprehensive Cache InspectionJie Tao, Wolfgang Karl. 174-181 [doi]
• Optimization-Oriented Visualization of Cache Access BehaviorJie Tao, Wolfgang Karl. 182-190 [doi]
• Collecting and Exploiting Cache-Reuse MetricsJosef Weidendorfer, Carsten Trinitis. 191-198 [doi]
• Modelling and Animating Hand WrinklesX. S. Yang, Jian J. Zhang. 199-206 [doi]
• Simulating Wrinkles in Facial Expressions on an Anatomy-Based FaceYu Zhang, Terence Sim, Chew Lim Tan. 207-215 [doi]
• A Multiresolutional Approach for Facial Motion Retargetting Using Subdivision WaveletsKyungha Min, Moon-Ryul Jung. 216-223 [doi]
• New 3D Graphics Rendering Engine Architecture for Direct Tessellation of Spline SurfacesAdrian Sfarti, Brian A. Barsky, Todd J. Kosloff, Egon C. Pasztor, Alex Kozlowski, Eric Roman, Alex Perelman. 224-231 [doi]
• Fast Water Animation Using the Wave Equation with DampingY. Nishidate, G. P. Nikishkov. 232-239 [doi]
• A Comparative Study of Acceleration Techniques for Geometric VisualizationPascual Castelló, J. Francisco Ramos, Miguel Chover. 240-247 [doi]
• Building Chinese Ancient Architectures in SecondsHua Liu, Qing Wang, Wei Hua, Dong Zhou, Hujun Bao. 248-255 [doi]
• Accelerated 2D Image Processing on GPUsBryson R. Payne, Saeid Belkasim, G. Scott Owen, Michael Weeks, Ying Zhu. 256-264 [doi]
• Consistent Spherical ParameterizationArul Asirvatham, Emil Praun, Hugues Hoppe. 265-272 [doi]
• Mesh Smoothing via Adaptive Bilateral FilteringQibin Hou, Li Bai, Yangsheng Wang. 273-280 [doi]
• Towards a Bayesian Approach to Robust Finding Correspondences in Multiple View Geometry EnvironmentsCristian Canton-Ferrer, Josep R. Casas, Montse Pardàs. 281-289 [doi]
• Managing Deformable Objects in Cluster RenderingThomas Convard, Patrick Bourdot, Jean-Marc Vézien. 290-297 [doi]
• Revolute Quadric Decomposition of Canal Surfaces and Its ApplicationsJinyuan Jia, Ajay Joneja, Kai Tang. 298-305 [doi]
• Adaptive Surface Modeling Using a Quadtree of Quadratic Finite ElementsG. P. Nikishkov. 306-313 [doi]
• MC Slicing for Volume Rendering ApplicationsA. Benassarou, Eric Bittar, N. W. John, Laurent Lucas. 314-321 [doi]
• Modelling and Sampling Ramified Objects with Substructure-Based MethodWeiwei Yin, Marc Jaeger, Jun Teng, Bao-Gang Hu. 322-326 [doi]
• Integration of Multiple Segmentation Based Environment ModelsSeung Taek Ryoo, Cheung-Woon Jho. 327-330 [doi]
• On the Impulse Method for Cloth AnimationJuntao Ye, Robert E. Webber, Irene Gargantini. 331-334 [doi]
• Remeshing Triangle Meshes with BoundariesYong Wu, Yuanjun He, Hongming Cai. 335-338 [doi]
• SACARI: An Immersive Remote Driving Interface for Autonomous VehiclesAntoine Tarault, Patrick Bourdot, Jean-Marc Vézien. 339-342 [doi]
• A 3D Model Retrieval Method Using 2D Freehand SketchesJiantao Pu, Karthik Ramani. 343-346 [doi]
• A 3D User Interface for Visualizing Neuron Location in Invertebrate GangliaJason A. Pamplin, Ying Zhu, Paul S. Katz, Rajshekhar Sunderraman. 347-350 [doi]
• The Dynamics of General Fuzzy Cellular AutomataAngelo B. Mingarelli. 351-359 [doi]
• A Cellular Automaton SIS Epidemiological Model with Spatially Clustered RecoveriesDavid Hiebeler. 360-367 [doi]
• Simulating Market Dynamics with CD++Qi Liu, Gabriel Andrés Wainer. 368-372 [doi]
• A Model of Virus Spreading Using Cell-DEVSHui Shang, Gabriel Andrés Wainer. 373-377 [doi]
• A Cellular Automata Model of Competition in Technology Markets with Network ExternalitiesJudy K. Frels, Debra Heisler, James A. Reggia, Hans-Joachim Schuetze. 378-385 [doi]
• Self-organizing Dynamics for OptimizationStefan Boettcher. 386-394 [doi]
• Constructibility of Signal-Crossing Solutions in von Neumann 29-State Cellular AutomataWilliam R. Buckley, Amar Mukherjee. 395-403 [doi]
• Evolutionary Discovery of Arbitrary Self-replicating StructuresZhijian Pan, James A. Reggia. 404-411 [doi]
• Modelling Ant Brood Tending Behavior with Cellular AutomataDaniel Merkle, Martin Middendorf, Alexander Scheidler. 412-419 [doi]
• A Realistic Cellular Automata Model to Simulate Traffic Flow at Urban RoundaboutsRuili Wang, Mingzhe Liu. 420-427 [doi]
• Probing the Eddies of Dancing Emergence: Complexity and Abstract PaintingTara Krause. 428-435 [doi]
• Enhanced TCP with End-to-End Bandwidth and Loss Differentiation Estimate over Heterogeneous NetworksLe Tuan Anh, Choong Seon Hong. 436-443 [doi]
• Content-Aware Automatic QoS Provisioning for UpnP AV-Based Multimedia Services over Wireless LANsYeali S. Sun, Chang-Ching Yan, Meng Chang Chen. 444-452 [doi]
• Simulation Framework for Wireless Internet Access NetworksHyoung-Kee Choi, Jitae Shin. 453-460 [doi]
• WDM: An Energy-Efficient Multi-hop Routing Algorithm for Wireless Sensor NetworksZengwei Zheng, Zhaohui Wu, Huaizhong Lin, Kougen Zheng. 461-467 [doi]
• Forwarding Scheme Extension for Fast and Secure Handoff in Hierarchical MIPv6Hoseong Jeon, Jungmuk Lim, Hyunseung Choo, Gyung-Leen Park. 468-476 [doi]
• Back-Up Chord: Chord Ring Recovery Protocol for P2P File Sharing over MANETsHong-Jong Jeong, Dongkyun Kim, Jeomki Song, Byung-yeub Kim, Jeong Su Park. 477-484 [doi]
• PATM: Priority-Based Adaptive Topology Management for Efficient Routing in Ad Hoc NetworksHaixia Tan, Weilin Zeng, Lichun Bao. 485-492 [doi]
• Practical and Provably-Secure Multicasting over High-Delay NetworksJunghyun Nam, Hyunjue Kim, Seungjoo Kim, Dongho Won, Hyungkyu Yang. 493-501 [doi]
• A Novel IDS Agent Distributing Protocol for MANETsXin Jin, Yaoxue Zhang, Yue-Zhi Zhou, Yaya Wei. 502-509 [doi]
• ID-Based Secure Session Key Exchange Scheme to Reduce Registration Delay with AAA in Mobile IP NetworksKwang Cheol Jeong, Hyunseung Choo, Sang Yong Ha. 510-518 [doi]
• An Efficient Wireless Resource Allocation Based on a Data Compressor PredictorMin Zhang, Xiaolong Yang, Hong Jiang. 519-526 [doi]
• A Seamless Handover Mechanism for IEEE 802.16e Broadband Wireless AccessKyung-ah Kim, Chong-kwon Kim, Tongsok Kim. 527-534 [doi]
• Fault Tolerant Coverage Model for Sensor NetworksDoina Bein, Wolfgang W. Bein, Srilaxmi Malladi. 535-542 [doi]
• Detection Algorithms Based on Chip-Level Processing for DS/CDMA Code Acquisition in Fast Fading ChannelsSeokho Yoon, Jee-Hyong Lee, Sun Yong Kim. 543-550 [doi]
• Clustering-Based Distributed Precomputation for Quality-of-Service RoutingYong Cui, Jianping Wu. 551-558 [doi]
• Traffic Grooming Algorithm Using Shortest EDPs Table in WDM Mesh NetworksSeungsoo Lee, Tae-Jin Lee, Min Young Chung, Hyunseung Choo. 559-567 [doi]
• Efficient Indexing of Moving Objects Using Time-Based Partitioning with R-TreeYoun Chul Jung, Hee Yong Youn, Ung-Mo Kim. 568-575 [doi]
• Publish/Subscribe Systems on Node and Link Error Prone Mobile EnvironmentsSangyoon Oh, Sangmi Lee Pallickara, Sung Hoon Ko, Jai-Hoon Kim, Geoffrey Fox. 576-584 [doi]
• A Power Efficient Routing Protocol in Wireless Sensor NetworksHyunSook Kim, Jung-Pil Ryu, Kijun Han. 585-592 [doi]
• Applying Mobile Agent to Intrusion Response for Ad Hoc NetworksPing Yi, YiPing Zhong, Shiyong Zhang. 593-600 [doi]
• A Vertical Handoff Decision Process and Algorithm Based on Context Information in CDMA-WLAN InterworkingJang-Sub Kim, Min Young Chung, Dong Ryeol Shin. 601-609 [doi]
• Dynamic Data Driven Applications Systems: New Capabilities for Application Simulations and MeasurementsFrederica Darema. 610-615 [doi]
• Dynamic Data Driven Methodologies for Multiphysics System Modeling and SimulationJohn Michopoulos, Charbel Farhat, Elias N. Houstis, Panagiota Tsompanopoulou, H. Zhang, T. Gullaud. 616-623 [doi]
• Towards Dynamically Adaptive Weather Analysis and Forecasting in LEADBeth Plale, Dennis Gannon, Daniel A. Reed, Sara J. Graves, Kelvin Droegemeier, Robert Wilhelmson, Mohan Ramamurthy. 624-631 [doi]
• Towards a Dynamic Data Driven Application System for Wildfire SimulationJan Mandel, Lynn S. Bennethum, Mingshi Chen, Janice L. Coen, Craig C. Douglas, Leopoldo P. Franca, Craig J. Johns, Minjeong Kim, Andrew V. Knyazev, Robert Kremens, Vaibhav Kulkarni, Guan Qin, Anthony Vodacek, Jianjia Wu, Wei Zhao, Adam Zornes. 632-639 [doi]
• Multiscale Interpolation, Backward in Time Error Analysis for Data-Driven Contaminant SimulationCraig C. Douglas, Yalchin Efendiev, Richard E. Ewing, Victor Ginting, Raytcho D. Lazarov, Martin J. Cole, Greg Jones, Chris R. Johnson. 640-647 [doi]
• Ensemble-Based Data Assimilation for Atmospheric Chemical Transport ModelsAdrian Sandu, Emil M. Constantinescu, Wenyuan Liao, Gregory R. Carmichael, Tianfeng Chai, John H. Seinfeld, Dacian N. Daescu. 648-655 [doi]
• Towards Dynamic Data-Driven Optimization of Oil Well PlacementManish Parashar, Vincent Matossian, Wolfgang Bangerth, Hector Klie, Benjamin Rutt, Tahsin M. Kurç, Ümit V. Çatalyürek, Joel H. Saltz, Mary F. Wheeler. 656-663 [doi]
• High-Fidelity Simulation of Large-Scale StructuresChristoph Hoffmann, Ahmed H. Sameh, Ananth Grama. 664-671 [doi]
• A Dynamic Data Driven Grid System for Intra-operative Image Guided NeurosurgeryAmitava Majumdar, Adam Birnbaum, Dong Ju Choi, Abhishek Trivedi, Simon K. Warfield, Kim Baldridge, Petr Krysl. 672-679 [doi]
• Structure-Based Integrative Computational and Experimental Approach for the Optimization of Drug DesignDimitrios Morikis, Christodoulos A. Floudas, John D. Lambris. 680-688 [doi]
• Simulation and Visualization of Air Flow Around Bat Wings During FlightIgor Pivkin, Eduardo Hueso, R. Weinstein, David H. Laidlaw, Sharon Swartz, George E. Karniadakis. 689-694 [doi]
• Integrating Fire, Structure and Agent ModelsAlok R. Chaturvedi, S. A. Filatyev, J. P. Gore, A. Hanna, J. Means, A. K. Mellema. 695-702 [doi]
• A Dynamic, Data-Driven, Decision Support System for Emergency Medical ServicesMark Gaynor, Margo I. Seltzer, Steve Moulton, Jim Freedman. 703-711 [doi]
• Dynamic Data Driven Coupling of Continuous and Discrete Methods for 3D TrackingDimitris N. Metaxas, Gabriel Tsechpenakis. 712-720 [doi]
• Semi-automated Simulation Transformation for DDDASDavid C. Brogan, Paul F. Reynolds Jr., Robert G. Bartholet, Joseph C. Carnahan, Yannick Loitière. 721-728 [doi]
• The Development of Dependable and Survivable GridsAndrew S. Grimshaw, Marty A. Humphrey, John C. Knight, Anh Nguyen-Tuong, Jonathan C. Rowanhill, Glenn S. Wasson, Jim Basney. 729-737 [doi]
• On the Fundamental Tautology of Validating Data-Driven Models and SimulationsJohn Michopoulos, Sam Lambrakos. 738-745 [doi]
• Managing Heterogeneity in a Grid Parallel HaskellAbdallah Al Zain, Philip W. Trinder, Hans-Wolfgang Loidl, Greg Michaelson. 746-754 [doi]
• An Efficient Equi-semi-join Algorithm for Distributed ArchitecturesMostafa Bamha, Gaétan Hains. 755-763 [doi]
• Two Fundamental Concepts in Skeletal Parallel ProgrammingAnne Benoit, Murray Cole. 764-771 [doi]
• A Formal Framework for Orthogonal Data and Control Parallelism HandlingSonia Campa. 772-780 [doi]
• Empirical Parallel Performance Prediction from Semantics-Based ProfilingNorman Scaife, Greg Michaelson, Susumu Horiguchi. 781-789 [doi]
• Dynamic Memory Management in the Loci FrameworkYang Zhang, Edward A. Luke. 790-797 [doi]
• On Adaptive Mesh Refinement for Atmospheric Pollution ModelsEmil M. Constantinescu, Adrian Sandu. 798-805 [doi]
• Total Energy Singular Vectors for Atmospheric Chemical Transport ModelsWenyuan Liao, Adrian Sandu. 806-813 [doi]
• Application of Static Adaptive Grid Techniques for Regional-Urban Multiscale Air Quality ModelingDaewon Byun, Peter Percell, Tanmay Basak. 814-821 [doi]
• On the Accuracy of High-Order Finite Elements in Curvilinear CoordinatesStephen J. Thomas, Amik St.-Cyr. 822-828 [doi]
• Analysis of Discrete Adjoints for Upwind Numerical SchemesZheng Liu, Adrian Sandu. 829-836 [doi]
• The Impact of Background Error on Incomplete Observations for 4D-Var Data Assimilation with the FSU GSMI. Michael Navon, Dacian N. Daescu, Zhuo Liu. 837-844 [doi]
• Disjoint Segments with Maximum DensityYen Hung Chen, Hsueh-I Lu, Chuan Yi Tang. 845-850 [doi]
• Wiener Indices of Balanced Binary TreesSergey Bereg, Hao Wang. 851-859 [doi]
• What Makes the Arc-Preserving Subsequence Problem Hard?Guillaume Blin, Guillaume Fertin, Romeo Rizzi, Stéphane Vialette. 860-868 [doi]
• An Efficient Dynamic Programming Algorithm and Implementation for RNA Secondary Structure PredictionGuangming Tan, Xinchun Liu, Ninghui Sun. 869-876 [doi]
• Performance Evaluation of Protein Sequence Clustering ToolsHaifeng Liu, Loo-Nin Teow. 877-885 [doi]
• A Data-Adaptive Approach to cDNA Microarray Image EnhancementRastislav Lukac, Konstantinos N. Plataniotis, Bogdan Smolka, Anastasios N. Venetsanopoulos. 886-893 [doi]
• String Kernels of Imperfect Matches for Off-target Detection in RNA InterferenceShibin Qiu, Terran Lane. 894-902 [doi]
• A New Kernel Based on High-Scored Pairs of Tri-peptides and Its Application in Prediction of Protein Subcellular LocalizationZhengdeng Lei, Yang Dai. 903-910 [doi]
• Reconstructing Phylogenetic Trees of Prokaryote Genomes by Randomly Sampling OligopeptidesOsamu Maruyama, Akiko Matsuda, Satoru Kuhara. 911-918 [doi]
• Phylogenetic Networks, Trees, and ClustersLuay Nakhleh, Li-San Wang. 919-926 [doi]
• SWAT: A New Spliced Alignment Tool Tailored for Handling More Sequencing ErrorsYifeng Li, Hesham H. Ali. 927-935 [doi]
• Simultaneous Alignment and Structure Prediction of RNAsBeeta Masoumi, Marcel Turcotte. 936-943 [doi]
• Clustering Using Adaptive Self-organizing Maps (ASOM) and ApplicationsYong Wang, Chengyong Yang, Kalai Mathee, Giri Narasimhan. 944-951 [doi]
• Experimental Analysis of a New Algorithm for Partial Haplotype CompletionPaola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Lorenzo Mariani. 952-959 [doi]
• Improving the Sensitivity and Specificity of Protein Homology Search by Incorporating Predicted Secondary StructuresBin Ma, Lieyu Wu, Kaizhong Zhang. 960-967 [doi]
• Profiling and Searching for RNA Pseudoknot Structures in GenomesChunmei Liu, Yinglei Song, Russell L. Malmberg, Liming Cai. 968-975 [doi]
• Integrating Text Chunking with Mixture Hidden Markov Models for Effective Biomedical Information ExtractionMin Song, Il-Yeol Song, Xiaohua Hu, Robert B. Allen. 976-984 [doi]
• k-Recombination Haplotype Inference in PedigreesFrancis Y. L. Chin, Qiangfeng Zhang, Hong Shen. 985-993 [doi]
• Improved Tag Set Design and Multiplexing Algorithms for Universal ArraysIon I. Mandoiu, Claudia Prajescu, Dragos Trinca. 994-1002 [doi]
• A Parallel Implementation for Determining Genomic Distances Under Deletion and InsertionVijaya Smitha Kolli, Hui Liu, Michelle Hong Pan, Yi Pan. 1003-1010 [doi]
• Phasing and Missing Data Recovery in Family TriosDumitru Brinza, Jingwu He, Weidong Mao, Alexander Zelikovsky. 1011-1019 [doi]
• Highly Scalable Algorithms for Robust String BarcodingBhaskar DasGupta, Kishori M. Konwar, Ion I. Mandoiu, Alexander A. Shvartsman. 1020-1028 [doi]
• Optimal Group Testing Strategies with Interval Queries and Their Application to Splice Site DetectionFerdinando Cicalese, Peter Damaschke, Ugo Vaccaro. 1029-1037 [doi]
• Virtual Gene: A Gene Selection Algorithm for Sample Classification on Microarray DatasetsXian Xu, Aidong Zhang. 1038-1045 [doi]
• Bulk Synchronous Parallel ML: Modular Implementation and Performance PredictionFrédéric Loulergue, Frédéric Gava, David Billiet. 1046-1054 [doi]
• Fast Expression TemplatesJochen Härdtlein, Alexander Linke, Christoph Pflaum. 1055-1063 [doi]
• Solving Coupled Geoscience Problems on High Performance Computing PlatformsDany Kemmler, Panagiotis A. Adamidis, Wenqing Wang, Sebastian Bauer, Olaf Kolditz. 1064-1071 [doi]
• H2O Metacomputing - Jini Lookup and DiscoveryDirk Gorissen, Gunther Stuer, Kurt Vanmechelen, Jan Broeckhove. 1072-1079 [doi]
• User Experiences with Nuclear Physics Calculations on a H2O Metacomputing System and on the BEgridPeter Hellinckx, Kurt Vanmechelen, Gunther Stuer, Frans Arickx, Jan Broeckhove. 1080-1088 [doi]